Analysis of Ligand-Protein Contacts in PDB entry:
5D1D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 5D1D. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
ACE
C
1 3ACETYL GROUP
lig 2
ALY
C
4 12N(6)-ACETYLLYSINE
lig 3
ALY
C
5 12N(6)-ACETYLLYSINE
lig 4
MCM
C
6 137-AMINO-4-METHYL-CHROMEN-2-ONE
lig 5
ACE
D
1 3ACETYL GROUP
lig 6
ALY
D
4 12N(6)-ACETYLLYSINE
lig 7
ALY
D
5 12N(6)-ACETYLLYSINE
lig 8
MCM
D
6 137-AMINO-4-METHYL-CHROMEN-2-ONE
lig 9
ZN
A
401 1ZINC ION
lig 10
K
A
402 1POTASSIUM ION
lig 11
K
A
403 1POTASSIUM ION
lig 12
ZN
B
401 1ZINC ION
lig 13
K
B
402 1POTASSIUM ION
lig 14
K
B
403 1POTASSIUM ION