Analysis of Ligand-Protein Contacts in PDB entry:
5D40


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 5D40. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
HEM
A
501 43PROTOPORPHYRIN IX CONTAINING FE
lig 2
TRP
A
502 15TRYPTOPHAN
lig 3
GOL
A
503 6GLYCEROL
lig 4
GOL
A
504 6GLYCEROL
lig 5
HEM
B
501 43PROTOPORPHYRIN IX CONTAINING FE
lig 6
TRP
B
502 15TRYPTOPHAN
lig 7
GOL
B
503 6GLYCEROL
lig 8
GOL
B
504 6GLYCEROL
lig 9
GOL
B
505 6GLYCEROL
lig 10
GOL
B
506 6GLYCEROL
lig 11
GOL
B
507 6GLYCEROL
lig 12
GOL
B
508 6GLYCEROL
lig 13
GOL
B
509 6GLYCEROL
lig 14
CL
B
510 1CHLORIDE ION