Analysis of Ligand-Protein Contacts in PDB entry:
5D62


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5D62. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PHQ
L
1 10BENZYL CHLOROCARBONATE
lig 2
CF0
L
5 1FLUOROMETHANE
lig 3
GAL
B
1 12BETA-D-GALACTOPYRANOSE
lig 4
FUC
B
2 10ALPHA-L-FUCOPYRANOSE
lig 5
GLA
B
3 11ALPHA-D-GALACTOPYRANOSE
lig 6
GLA
C
1 12ALPHA-D-GALACTOPYRANOSE
lig 7
GLA
C
2 11ALPHA-D-GALACTOPYRANOSE
lig 8
GLA
D
1 12ALPHA-D-GALACTOPYRANOSE
lig 9
GLA
D
2 11ALPHA-D-GALACTOPYRANOSE
lig 10
FUC
A
304 10ALPHA-L-FUCOPYRANOSE
lig 11
FUC
A
307 10ALPHA-L-FUCOPYRANOSE
lig 12
EDO
A
310 41,2-ETHANEDIOL
lig 13
EDO
A
311 41,2-ETHANEDIOL
lig 14
EDO
A
312 41,2-ETHANEDIOL
lig 15
DMS
A
313 4DIMETHYL SULFOXIDE
lig 16
DMS
A
314 4DIMETHYL SULFOXIDE
lig 17
CL
A
315 1CHLORIDE ION
lig 18
CL
A
316 1CHLORIDE ION
lig 19
CA
A
317 1CALCIUM ION
lig 20
CA
A
318 1CALCIUM ION