Analysis of Ligand-Protein Contacts in PDB entry:
5D6D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5D6D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
D
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
GAL
D
6 11BETA-D-GALACTOPYRANOSE
lig 7
MAN
D
7 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
D
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
FUL
D
9 10BETA-L-FUCOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 14
NAG
E
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
GAL
E
6 11BETA-D-GALACTOPYRANOSE
lig 16
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 17
NAG
E
8 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
FUC
B
509 10ALPHA-L-FUCOPYRANOSE
lig 19
NAG
C
301 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
C
302 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE