Analysis of Ligand-Protein Contacts in PDB entry:
5D8P


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 105 ligands in PDB entry 5D8P. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
K
A
201 1POTASSIUM ION
lig 2
FE2
A
202 1FE (II) ION
lig 3
FE2
A
203 1FE (II) ION
lig 4
FE2
A
204 1FE (II) ION
lig 5
FE2
A
205 1FE (II) ION
lig 6
FE2
A
206 1FE (II) ION
lig 7
FE2
A
207 1FE (II) ION
lig 8
HEM
A
208 43PROTOPORPHYRIN IX CONTAINING FE
lig 9
ACT
A
209 4ACETATE ION
lig 10
K
B
201 1POTASSIUM ION
lig 11
FE2
B
202 1FE (II) ION
lig 12
FE2
B
203 1FE (II) ION
lig 13
FE2
B
204 1FE (II) ION
lig 14
FE2
B
205 1FE (II) ION
lig 15
FE2
B
206 1FE (II) ION
lig 16
FE2
B
207 1FE (II) ION
lig 17
FE2
B
208 1FE (II) ION
lig 18
ACT
B
209 4ACETATE ION
lig 19
FE2
C
201 1FE (II) ION
lig 20
FE2
C
202 1FE (II) ION
lig 21
FE2
C
203 1FE (II) ION
lig 22
FE2
C
204 1FE (II) ION
lig 23
FE2
C
205 1FE (II) ION
lig 24
HEM
C
206 43PROTOPORPHYRIN IX CONTAINING FE
lig 25
ACT
C
207 4ACETATE ION
lig 26
K
D
201 1POTASSIUM ION
lig 27
FE2
D
202 1FE (II) ION
lig 28
FE2
D
203 1FE (II) ION
lig 29
FE2
D
204 1FE (II) ION
lig 30
FE2
D
205 1FE (II) ION
lig 31
FE2
D
206 1FE (II) ION
lig 32
FE2
D
207 1FE (II) ION
lig 33
FE2
D
208 1FE (II) ION
lig 34
FE2
D
209 1FE (II) ION
lig 35
HEM
D
210 43PROTOPORPHYRIN IX CONTAINING FE
lig 36
ACT
D
211 4ACETATE ION
lig 37
FE2
E
201 1FE (II) ION
lig 38
FE2
E
202 1FE (II) ION
lig 39
FE2
E
203 1FE (II) ION
lig 40
FE2
E
204 1FE (II) ION
lig 41
FE2
E
205 1FE (II) ION
lig 42
HEM
E
206 43PROTOPORPHYRIN IX CONTAINING FE
lig 43
ACT
E
207 4ACETATE ION
lig 44
FE2
F
201 1FE (II) ION
lig 45
FE2
F
202 1FE (II) ION
lig 46
FE2
F
203 1FE (II) ION
lig 47
FE2
F
204 1FE (II) ION
lig 48
FE2
F
205 1FE (II) ION
lig 49
FE2
F
206 1FE (II) ION
lig 50
FE2
F
207 1FE (II) ION
lig 51
ACT
F
208 4ACETATE ION
lig 52
ACT
F
209 4ACETATE ION
lig 53
ACT
F
210 4ACETATE ION
lig 54
ACT
F
211 4ACETATE ION
lig 55
ACT
F
212 4ACETATE ION
lig 56
FE2
G
201 1FE (II) ION
lig 57
FE2
G
202 1FE (II) ION
lig 58
FE2
G
203 1FE (II) ION
lig 59
FE2
G
204 1FE (II) ION
lig 60
FE2
G
205 1FE (II) ION
lig 61
FE2
G
206 1FE (II) ION
lig 62
FE2
G
207 1FE (II) ION
lig 63
ACT
G
208 4ACETATE ION
lig 64
FE2
H
201 1FE (II) ION
lig 65
FE2
H
202 1FE (II) ION
lig 66
FE2
H
203 1FE (II) ION
lig 67
FE2
H
204 1FE (II) ION
lig 68
FE2
H
205 1FE (II) ION
lig 69
FE2
H
206 1FE (II) ION
lig 70
FE2
H
207 1FE (II) ION
lig 71
FE2
H
208 1FE (II) ION
lig 72
ACT
H
209 4ACETATE ION
lig 73
ACT
H
210 4ACETATE ION
lig 74
ACT
H
211 4ACETATE ION
lig 75
FE2
I
201 1FE (II) ION
lig 76
FE2
I
202 1FE (II) ION
lig 77
FE2
I
203 1FE (II) ION
lig 78
FE2
I
204 1FE (II) ION
lig 79
FE2
I
205 1FE (II) ION
lig 80
FE2
I
206 1FE (II) ION
lig 81
FE2
I
207 1FE (II) ION
lig 82
ACT
I
208 4ACETATE ION
lig 83
FE2
J
201 1FE (II) ION
lig 84
FE2
J
202 1FE (II) ION
lig 85
FE2
J
203 1FE (II) ION
lig 86
FE2
J
204 1FE (II) ION
lig 87
FE2
J
205 1FE (II) ION
lig 88
FE2
J
206 1FE (II) ION
lig 89
HEM
J
207 43PROTOPORPHYRIN IX CONTAINING FE
lig 90
ACT
J
208 4ACETATE ION
lig 91
FE2
K
201 1FE (II) ION
lig 92
FE2
K
202 1FE (II) ION
lig 93
FE2
K
203 1FE (II) ION
lig 94
FE2
K
204 1FE (II) ION
lig 95
FE2
K
205 1FE (II) ION
lig 96
HEM
K
206 43PROTOPORPHYRIN IX CONTAINING FE
lig 97
ACT
K
207 4ACETATE ION
lig 98
FE2
L
201 1FE (II) ION
lig 99
FE2
L
202 1FE (II) ION
lig 100
FE2
L
203 1FE (II) ION
lig 101
FE2
L
204 1FE (II) ION
lig 102
FE2
L
205 1FE (II) ION
lig 103
FE2
L
206 1FE (II) ION
lig 104
HEM
L
207 43PROTOPORPHYRIN IX CONTAINING FE
lig 105
ACT
L
208 4ACETATE ION