Analysis of Ligand-Protein Contacts in PDB entry:
5D8X


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 75 ligands in PDB entry 5D8X. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HEM
A
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 2
K
A
202 1POTASSIUM ION
lig 3
MRD
A
203 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 4
NA
A
204 1SODIUM ION
lig 5
NA
A
205 1SODIUM ION
lig 6
K
B
201 1POTASSIUM ION
lig 7
MRD
B
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 8
NA
B
203 1SODIUM ION
lig 9
NA
B
204 1SODIUM ION
lig 10
MPD
C
201 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 11
HEM
C
202 43PROTOPORPHYRIN IX CONTAINING FE
lig 12
NA
C
203 1SODIUM ION
lig 13
K
D
201 1POTASSIUM ION
lig 14
MRD
D
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 15
NA
D
203 1SODIUM ION
lig 16
NA
D
204 1SODIUM ION
lig 17
HEM
E
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 18
K
E
202 1POTASSIUM ION
lig 19
MRD
E
203 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 20
MRD
E
204 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 21
NA
E
205 1SODIUM ION
lig 22
NA
E
206 1SODIUM ION
lig 23
MRD
F
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 24
NA
F
202 1SODIUM ION
lig 25
HEM
G
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 26
K
G
202 1POTASSIUM ION
lig 27
MRD
G
203 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 28
NA
G
204 1SODIUM ION
lig 29
NA
G
205 1SODIUM ION
lig 30
MRD
H
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 31
NA
H
202 1SODIUM ION
lig 32
MRD
I
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 33
MPD
I
202 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 34
HEM
I
203 43PROTOPORPHYRIN IX CONTAINING FE
lig 35
NA
I
204 1SODIUM ION
lig 36
MPD
J
201 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 37
MRD
J
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 38
NA
J
203 1SODIUM ION
lig 39
HEM
K
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 40
MRD
K
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 41
MPD
K
203 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 42
NA
K
204 1SODIUM ION
lig 43
K
L
201 1POTASSIUM ION
lig 44
MPD
L
202 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 45
NA
L
203 1SODIUM ION
lig 46
NA
L
204 1SODIUM ION
lig 47
HEM
M
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 48
MRD
M
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 49
MRD
M
203 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 50
NA
M
204 1SODIUM ION
lig 51
MRD
N
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 52
MRD
N
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 53
NA
N
203 1SODIUM ION
lig 54
MRD
O
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 55
HEM
O
202 43PROTOPORPHYRIN IX CONTAINING FE
lig 56
MRD
P
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 57
HEM
Q
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 58
MPD
Q
202 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 59
MPD
Q
203 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 60
MPD
R
201 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 61
MRD
R
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 62
NA
R
203 1SODIUM ION
lig 63
MPD
S
201 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 64
MRD
S
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 65
NA
S
203 1SODIUM ION
lig 66
HEM
S
204 43PROTOPORPHYRIN IX CONTAINING FE
lig 67
MRD
T
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 68
NA
T
202 1SODIUM ION
lig 69
HEM
U
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 70
MRD
U
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 71
MRD
V
201 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 72
NA
V
202 1SODIUM ION
lig 73
HEM
W
201 43PROTOPORPHYRIN IX CONTAINING FE
lig 74
MRD
W
202 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 75
MRD
X
201 8(4R)-2-METHYLPENTANE-2,4-DIOL