Analysis of Ligand-Protein Contacts in PDB entry:
5DKP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 115 ligands in PDB entry 5DKP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OTT
O
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 2
MAA
O
5 6N-METHYL-L-ALANINE
lig 3
MP8
O
7 8(4R)-4-METHYL-L-PROLINE
lig 4
OTT
P
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 5
MAA
P
5 6N-METHYL-L-ALANINE
lig 6
MP8
P
7 8(4R)-4-METHYL-L-PROLINE
lig 7
OTT
Q
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 8
MAA
Q
5 6N-METHYL-L-ALANINE
lig 9
MP8
Q
7 8(4R)-4-METHYL-L-PROLINE
lig 10
OTT
R
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 11
MAA
R
5 6N-METHYL-L-ALANINE
lig 12
MP8
R
7 8(4R)-4-METHYL-L-PROLINE
lig 13
OTT
S
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 14
MAA
S
5 6N-METHYL-L-ALANINE
lig 15
MP8
S
7 8(4R)-4-METHYL-L-PROLINE
lig 16
OTT
T
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 17
MAA
T
5 6N-METHYL-L-ALANINE
lig 18
MP8
T
7 8(4R)-4-METHYL-L-PROLINE
lig 19
OTT
U
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 20
MAA
U
5 6N-METHYL-L-ALANINE
lig 21
MP8
U
7 8(4R)-4-METHYL-L-PROLINE
lig 22
OTT
V
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 23
MAA
V
5 6N-METHYL-L-ALANINE
lig 24
MP8
V
7 8(4R)-4-METHYL-L-PROLINE
lig 25
OTT
W
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 26
MAA
W
5 6N-METHYL-L-ALANINE
lig 27
MP8
W
7 8(4R)-4-METHYL-L-PROLINE
lig 28
OTT
X
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 29
MAA
X
5 6N-METHYL-L-ALANINE
lig 30
MP8
X
7 8(4R)-4-METHYL-L-PROLINE
lig 31
OTT
Y
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 32
MAA
Y
5 6N-METHYL-L-ALANINE
lig 33
MP8
Y
7 8(4R)-4-METHYL-L-PROLINE
lig 34
OTT
Z
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 35
MAA
Z
5 6N-METHYL-L-ALANINE
lig 36
MP8
Z
7 8(4R)-4-METHYL-L-PROLINE
lig 37
OTT
o
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 38
MAA
o
5 6N-METHYL-L-ALANINE
lig 39
MP8
o
7 8(4R)-4-METHYL-L-PROLINE
lig 40
OTT
p
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 41
MAA
p
5 6N-METHYL-L-ALANINE
lig 42
MP8
p
7 8(4R)-4-METHYL-L-PROLINE
lig 43
OTT
q
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 44
MAA
q
5 6N-METHYL-L-ALANINE
lig 45
MP8
q
7 8(4R)-4-METHYL-L-PROLINE
lig 46
OTT
r
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 47
MAA
r
5 6N-METHYL-L-ALANINE
lig 48
MP8
r
7 8(4R)-4-METHYL-L-PROLINE
lig 49
OTT
s
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 50
MAA
s
5 6N-METHYL-L-ALANINE
lig 51
MP8
s
7 8(4R)-4-METHYL-L-PROLINE
lig 52
OTT
t
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 53
MAA
t
5 6N-METHYL-L-ALANINE
lig 54
MP8
t
7 8(4R)-4-METHYL-L-PROLINE
lig 55
OTT
u
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 56
MAA
u
5 6N-METHYL-L-ALANINE
lig 57
MP8
u
7 8(4R)-4-METHYL-L-PROLINE
lig 58
OTT
v
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 59
MAA
v
5 6N-METHYL-L-ALANINE
lig 60
MP8
v
7 8(4R)-4-METHYL-L-PROLINE
lig 61
OTT
w
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 62
MAA
w
5 6N-METHYL-L-ALANINE
lig 63
MP8
w
7 8(4R)-4-METHYL-L-PROLINE
lig 64
OTT
x
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 65
MAA
x
5 6N-METHYL-L-ALANINE
lig 66
MP8
x
7 8(4R)-4-METHYL-L-PROLINE
lig 67
OTT
y
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 68
MAA
y
5 6N-METHYL-L-ALANINE
lig 69
MP8
y
7 8(4R)-4-METHYL-L-PROLINE
lig 70
OTT
z
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 71
MAA
z
5 6N-METHYL-L-ALANINE
lig 72
MP8
z
7 8(4R)-4-METHYL-L-PROLINE
lig 73
OTT
0
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 74
MAA
0
5 6N-METHYL-L-ALANINE
lig 75
MP8
0
7 8(4R)-4-METHYL-L-PROLINE
lig 76
OTT
1
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 77
MAA
1
5 6N-METHYL-L-ALANINE
lig 78
MP8
1
7 8(4R)-4-METHYL-L-PROLINE
lig 79
OTT
2
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 80
MAA
2
5 6N-METHYL-L-ALANINE
lig 81
MP8
2
7 8(4R)-4-METHYL-L-PROLINE
lig 82
OTT
3
1 9(2E,4E,6E)-OCTA-2,4,6-TRIENOIC ACID
lig 83
MAA
3
5 6N-METHYL-L-ALANINE
lig 84
MP8
3
7 8(4R)-4-METHYL-L-PROLINE
lig 85
K
A
301 1POTASSIUM ION
lig 86
K
B
301 1POTASSIUM ION
lig 87
K
C
301 1POTASSIUM ION
lig 88
K
D
301 1POTASSIUM ION
lig 89
K
E
301 1POTASSIUM ION
lig 90
K
F
301 1POTASSIUM ION
lig 91
K
G
301 1POTASSIUM ION
lig 92
K
H
301 1POTASSIUM ION
lig 93
K
I
301 1POTASSIUM ION
lig 94
K
J
301 1POTASSIUM ION
lig 95
K
K
301 1POTASSIUM ION
lig 96
K
L
301 1POTASSIUM ION
lig 97
K
M
301 1POTASSIUM ION
lig 98
K
N
301 1POTASSIUM ION
lig 99
K
a
301 1POTASSIUM ION
lig 100
K
b
301 1POTASSIUM ION
lig 101
K
c
301 1POTASSIUM ION
lig 102
NA
c
302 1SODIUM ION
lig 103
K
d
301 1POTASSIUM ION
lig 104
K
e
301 1POTASSIUM ION
lig 105
K
f
301 1POTASSIUM ION
lig 106
K
g
301 1POTASSIUM ION
lig 107
K
h
301 1POTASSIUM ION
lig 108
NA
h
302 1SODIUM ION
lig 109
K
i
301 1POTASSIUM ION
lig 110
K
j
301 1POTASSIUM ION
lig 111
K
k
301 1POTASSIUM ION
lig 112
NA
k
302 1SODIUM ION
lig 113
K
l
301 1POTASSIUM ION
lig 114
K
m
301 1POTASSIUM ION
lig 115
K
n
301 1POTASSIUM ION