Analysis of Ligand-Protein Contacts in PDB entry:
5DLT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 38 ligands in PDB entry 5DLT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
209 11PHOSPHOTHREONINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 5
ZN
A
904 1ZINC ION
lig 6
ZN
A
905 1ZINC ION
lig 7
5JK
A
906 297ALPHA-HYDROXYCHOLESTEROL
lig 8
CA
A
907 1CALCIUM ION
lig 9
IOD
A
908 1IODIDE ION
lig 10
IOD
A
909 1IODIDE ION
lig 11
IOD
A
910 1IODIDE ION
lig 12
IOD
A
911 1IODIDE ION
lig 13
IOD
A
912 1IODIDE ION
lig 14
IOD
A
913 1IODIDE ION
lig 15
IOD
A
914 1IODIDE ION
lig 16
IOD
A
915 1IODIDE ION
lig 17
IOD
A
916 1IODIDE ION
lig 18
IOD
A
917 1IODIDE ION
lig 19
SCN
A
918 3THIOCYANATE ION
lig 20
SCN
A
919 3THIOCYANATE ION
lig 21
SCN
A
920 3THIOCYANATE ION
lig 22
SCN
A
921 3THIOCYANATE ION
lig 23
SCN
A
922 3THIOCYANATE ION
lig 24
SCN
A
923 3THIOCYANATE ION
lig 25
SCN
A
924 3THIOCYANATE ION
lig 26
SCN
A
925 3THIOCYANATE ION
lig 27
SCN
A
926 3THIOCYANATE ION
lig 28
SCN
A
927 3THIOCYANATE ION
lig 29
NA
A
928 1SODIUM ION
lig 30
NA
A
929 1SODIUM ION
lig 31
GOL
A
930 6GLYCEROL
lig 32
GOL
A
931 6GLYCEROL
lig 33
GOL
A
932 6GLYCEROL
lig 34
GOL
A
933 6GLYCEROL
lig 35
GOL
A
934 6GLYCEROL
lig 36
GOL
A
935 6GLYCEROL
lig 37
GOL
A
936 6GLYCEROL
lig 38
SCN
A
937 3THIOCYANATE ION