Analysis of Ligand-Protein Contacts in PDB entry:
5DNF

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 5DNF. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	SGN	J	1	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 2	IDS	J	2	16	2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
lig 3	SGN	J	3	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 4	SGN	K	1	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 5	IDS	K	2	16	2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
lig 6	SGN	K	3	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 7	SGN	L	1	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 8	IDS	L	2	16	2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
lig 9	SGN	L	3	19	2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-G
lig 10	GLA	A	101	11	ALPHA-D-GALACTOPYRANOSE
lig 11	BGC	A	102	12	BETA-D-GLUCOPYRANOSE
lig 12	SO4	A	103	5	SULFATE ION
lig 13	CL	A	104	1	CHLORIDE ION
lig 14	CL	A	105	1	CHLORIDE ION
lig 15	CL	B	101	1	CHLORIDE ION
lig 16	CL	B	102	1	CHLORIDE ION
lig 17	TRS	B	103	8	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 18	GLA	C	101	11	ALPHA-D-GALACTOPYRANOSE
lig 19	BGC	C	102	12	BETA-D-GLUCOPYRANOSE
lig 20	CL	C	103	1	CHLORIDE ION
lig 21	CL	C	104	1	CHLORIDE ION
lig 22	CL	C	105	1	CHLORIDE ION
lig 23	CL	C	106	1	CHLORIDE ION
lig 24	GLA	D	101	11	ALPHA-D-GALACTOPYRANOSE
lig 25	CL	D	102	1	CHLORIDE ION
lig 26	CL	D	103	1	CHLORIDE ION
lig 27	BGC	E	101	12	BETA-D-GLUCOPYRANOSE
lig 28	SO4	E	102	5	SULFATE ION
lig 29	CL	E	103	1	CHLORIDE ION
lig 30	GLA	F	101	11	ALPHA-D-GALACTOPYRANOSE
lig 31	SO4	F	102	5	SULFATE ION
lig 32	CL	F	103	1	CHLORIDE ION
lig 33	CL	F	104	1	CHLORIDE ION
lig 34	CL	F	105	1	CHLORIDE ION
lig 35	BGC	G	101	12	BETA-D-GLUCOPYRANOSE
lig 36	SO4	G	102	5	SULFATE ION
lig 37	CL	G	103	1	CHLORIDE ION
lig 38	CL	G	104	1	CHLORIDE ION
lig 39	GLA	H	101	11	ALPHA-D-GALACTOPYRANOSE
lig 40	BGC	H	102	12	BETA-D-GLUCOPYRANOSE
lig 41	SO4	H	103	5	SULFATE ION
lig 42	CL	H	104	1	CHLORIDE ION
lig 43	CL	H	105	1	CHLORIDE ION
lig 44	GLA	I	101	11	ALPHA-D-GALACTOPYRANOSE
lig 45	CL	I	102	1	CHLORIDE ION
lig 46	CL	I	103	1	CHLORIDE ION

Analysis of Ligand-Protein Contacts in PDB entry: 5DNF

Analysis of Ligand-Protein Contacts in PDB entry:
5DNF