Analysis of Ligand-Protein Contacts in PDB entry:
5DUB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 5DUB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PCA
A
2 8PYROGLUTAMIC ACID
lig 2
PCA
H
2 8PYROGLUTAMIC ACID
lig 3
5GG
P
4 14DEOXYHYPUSINE
lig 4
EDO
A
301 41,2-ETHANEDIOL
lig 5
EDO
A
302 41,2-ETHANEDIOL
lig 6
EDO
A
303 41,2-ETHANEDIOL
lig 7
EDO
A
304 41,2-ETHANEDIOL
lig 8
SO4
A
305 5SULFATE ION
lig 9
SO4
A
306 5SULFATE ION
lig 10
SO4
A
307 5SULFATE ION
lig 11
SO4
A
308 5SULFATE ION
lig 12
SO4
A
309 5SULFATE ION
lig 13
EDO
B
301 41,2-ETHANEDIOL
lig 14
EDO
B
302 41,2-ETHANEDIOL
lig 15
EDO
B
303 41,2-ETHANEDIOL
lig 16
EDO
B
304 41,2-ETHANEDIOL
lig 17
EDO
B
305 41,2-ETHANEDIOL
lig 18
EDO
B
306 41,2-ETHANEDIOL
lig 19
SO4
B
307 5SULFATE ION
lig 20
SO4
B
308 5SULFATE ION
lig 21
EDO
H
301 41,2-ETHANEDIOL
lig 22
EDO
H
302 41,2-ETHANEDIOL
lig 23
EDO
H
303 41,2-ETHANEDIOL
lig 24
EDO
H
304 41,2-ETHANEDIOL
lig 25
SO4
H
305 5SULFATE ION
lig 26
SO4
H
306 5SULFATE ION
lig 27
SO4
H
307 5SULFATE ION
lig 28
SO4
L
301 5SULFATE ION
lig 29
SO4
L
302 5SULFATE ION
lig 30
SO4
P
101 5SULFATE ION