Analysis of Ligand-Protein Contacts in PDB entry:
5DYJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 10 ligands in PDB entry 5DYJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
612 11PHOSPHOTHREONINE
lig 2
TPO
B
612 11PHOSPHOTHREONINE
lig 3
PO4
A
901 5PHOSPHATE ION
lig 4
ZN
A
902 1ZINC ION
lig 5
GOL
A
903 6GLYCEROL
lig 6
AMP
A
904 23ADENOSINE MONOPHOSPHATE
lig 7
PO4
B
901 5PHOSPHATE ION
lig 8
ZN
B
902 1ZINC ION
lig 9
GOL
B
903 6GLYCEROL
lig 10
AMP
B
904 23ADENOSINE MONOPHOSPHATE