Analysis of Ligand-Protein Contacts in PDB entry:
5DYT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 5DYT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CSO
A
66 7S-HYDROXYCYSTEINE
lig 2
CSO
B
66 7S-HYDROXYCYSTEINE
lig 3
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
FUC
C
3 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
FUC
G
3 10ALPHA-L-FUCOPYRANOSE
lig 16
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
FUC
I
2 10ALPHA-L-FUCOPYRANOSE
lig 20
NAG
A
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
A
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
5HB
A
603 29 METHYLNAPHTHALENE-2-SULFONAMIDE
lig 23
GOL
A
604 6GLYCEROL
lig 24
GOL
A
605 6GLYCEROL
lig 25
GOL
A
606 6GLYCEROL
lig 26
EDO
A
607 41,2-ETHANEDIOL
lig 27
UNX
A
608 1UNKNOWN ATOM OR ION
lig 28
UNX
A
609 1UNKNOWN ATOM OR ION
lig 29
UNX
A
610 1UNKNOWN ATOM OR ION
lig 30
NAG
B
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
B
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
B
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
FUL
B
604 10BETA-L-FUCOPYRANOSE
lig 34
NAG
B
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
B
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
B
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
5HB
B
608 29 METHYLNAPHTHALENE-2-SULFONAMIDE
lig 38
GOL
B
609 6GLYCEROL
lig 39
GOL
B
610 6GLYCEROL
lig 40
EDO
B
611 41,2-ETHANEDIOL
lig 41
EDO
B
612 41,2-ETHANEDIOL
lig 42
EDO
B
613 41,2-ETHANEDIOL
lig 43
UNX
B
614 1UNKNOWN ATOM OR ION
lig 44
UNX
B
615 1UNKNOWN ATOM OR ION
lig 45
UNX
B
616 1UNKNOWN ATOM OR ION
lig 46
PEG
B
617 7DI(HYDROXYETHYL)ETHER