Analysis of Ligand-Protein Contacts in PDB entry:
5EDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 5EDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CGU
A
6 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 2
CGU
A
7 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 3
CGU
A
14 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 4
CGU
A
16 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 5
CGU
A
19 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 6
CGU
A
20 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 7
CGU
A
25 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 8
CGU
A
26 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 9
CGU
A
29 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 10
CGU
A
32 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 11
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
MG
A
601 1MAGNESIUM ION
lig 16
MG
A
602 1MAGNESIUM ION
lig 17
MG
A
603 1MAGNESIUM ION
lig 18
MG
A
604 1MAGNESIUM ION
lig 19
MG
A
605 1MAGNESIUM ION
lig 20
MG
A
606 1MAGNESIUM ION
lig 21
NAG
A
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
SO4
A
612 5SULFATE ION
lig 23
SO4
A
613 5SULFATE ION
lig 24
SO4
A
614 5SULFATE ION
lig 25
SO4
A
615 5SULFATE ION
lig 26
SO4
A
616 5SULFATE ION
lig 27
SO4
A
617 5SULFATE ION
lig 28
SO4
A
618 5SULFATE ION
lig 29
SO4
A
619 5SULFATE ION
lig 30
GOL
A
620 6GLYCEROL
lig 31
SO4
A
621 5SULFATE ION