Analysis of Ligand-Protein Contacts in PDB entry:
5GJV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 43 ligands in PDB entry 5GJV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ETA
F
1075 4ETHANOLAMINE
lig 2
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 9
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 12
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
L
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
A
1901 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
PC1
A
1902 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
PC1
A
1903 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
PC1
A
1904 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
PC1
A
1905 381,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
PC1
A
1906 181,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
PC1
A
1907 121,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 26
PC1
A
1908 121,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 27
PC1
A
1909 151,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
PC1
A
1910 181,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 29
PC1
A
1911 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 30
PC1
A
1912 451,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
PC1
A
1913 181,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
PC1
A
1914 141,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 33
PC1
A
1915 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 34
CA
A
1916 1CALCIUM ION
lig 35
CA
A
1917 1CALCIUM ION
lig 36
NAG
F
1203 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
F
1206 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
F
1213 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
F
1214 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
F
1219 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
F
1220 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
F
1221 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
CA
F
1225 1CALCIUM ION