Analysis of Ligand-Protein Contacts in PDB entry:
5GKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 5GKD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
CA
A
801 1CALCIUM ION
lig 2
GOL
A
802 6GLYCEROL
lig 3
PO4
A
803 5PHOSPHATE ION
lig 4
PO4
A
804 5PHOSPHATE ION
lig 5
PO4
A
805 5PHOSPHATE ION
lig 6
CO3
A
806 4CARBONATE ION
lig 7
GOL
A
807 6GLYCEROL
lig 8
GOL
A
808 6GLYCEROL
lig 9
GOL
A
809 6GLYCEROL
lig 10
CA
B
801 1CALCIUM ION
lig 11
GOL
B
802 6GLYCEROL
lig 12
PO4
B
803 5PHOSPHATE ION
lig 13
PO4
B
804 5PHOSPHATE ION
lig 14
PO4
B
805 5PHOSPHATE ION
lig 15
CO3
B
806 4CARBONATE ION
lig 16
GOL
B
807 6GLYCEROL
lig 17
GOL
B
808 6GLYCEROL
lig 18
GOL
B
809 6GLYCEROL
lig 19
CA
C
801 1CALCIUM ION
lig 20
GOL
C
802 6GLYCEROL
lig 21
PO4
C
803 5PHOSPHATE ION
lig 22
PO4
C
804 5PHOSPHATE ION
lig 23
PO4
C
805 5PHOSPHATE ION
lig 24
CO3
C
806 4CARBONATE ION
lig 25
GOL
C
807 6GLYCEROL
lig 26
GOL
C
808 6GLYCEROL
lig 27
GOL
C
809 6GLYCEROL
lig 28
CA
D
801 1CALCIUM ION
lig 29
GOL
D
802 6GLYCEROL
lig 30
PO4
D
803 5PHOSPHATE ION
lig 31
PO4
D
804 5PHOSPHATE ION
lig 32
PO4
D
805 5PHOSPHATE ION
lig 33
CO3
D
806 4CARBONATE ION
lig 34
GOL
D
807 6GLYCEROL
lig 35
GOL
D
808 6GLYCEROL
lig 36
GOL
D
809 6GLYCEROL