Analysis of Ligand-Protein Contacts in PDB entry:
5GMF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 5GMF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
CA
A
901 1CALCIUM ION
lig 14
NAG
A
902 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
A
907 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
A
908 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
GMP
B
901 20GUANOSINE
lig 18
CA
B
902 1CALCIUM ION
lig 19
NAG
B
903 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
B
906 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
B
909 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
B
910 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
GMP
C
901 20GUANOSINE
lig 24
GMP
C
902 20GUANOSINE
lig 25
NAG
C
903 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
C
906 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
C
907 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
C
908 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
C
909 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
C
910 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
GMP
D
901 20GUANOSINE
lig 32
CA
D
902 1CALCIUM ION
lig 33
CA
D
903 1CALCIUM ION
lig 34
NAG
D
904 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
D
907 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
D
908 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
D
909 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
D
910 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE