Analysis of Ligand-Protein Contacts in PDB entry:
5GNK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 5GNK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
80U
A
1001 35 D]PYRIMIDIN-1-YL]PIPERIDIN-1-YL]PROP-2-EN
lig 2
NO3
A
1002 4NITRATE ION
lig 3
NO3
A
1003 4NITRATE ION
lig 4
NO3
A
1004 4NITRATE ION
lig 5
NO3
A
1005 4NITRATE ION
lig 6
NO3
A
1006 4NITRATE ION
lig 7
NO3
A
1007 4NITRATE ION
lig 8
NO3
A
1008 4NITRATE ION
lig 9
NO3
A
1009 4NITRATE ION
lig 10
NO3
A
1010 4NITRATE ION
lig 11
EDO
A
1011 41,2-ETHANEDIOL
lig 12
EDO
A
1012 41,2-ETHANEDIOL
lig 13
EDO
A
1013 41,2-ETHANEDIOL
lig 14
EDO
A
1014 41,2-ETHANEDIOL
lig 15
EDO
A
1015 41,2-ETHANEDIOL
lig 16
CL
A
1016 1CHLORIDE ION
lig 17
EDO
A
1017 41,2-ETHANEDIOL
lig 18
EDO
A
1018 41,2-ETHANEDIOL
lig 19
EDO
A
1019 41,2-ETHANEDIOL
lig 20
EDO
A
1020 41,2-ETHANEDIOL
lig 21
EDO
A
1021 41,2-ETHANEDIOL
lig 22
EDO
A
1022 41,2-ETHANEDIOL
lig 23
EDO
A
1023 41,2-ETHANEDIOL
lig 24
EDO
A
1024 41,2-ETHANEDIOL
lig 25
EDO
A
1025 41,2-ETHANEDIOL
lig 26
EDO
A
1026 41,2-ETHANEDIOL
lig 27
EDO
A
1027 41,2-ETHANEDIOL
lig 28
CL
A
1028 1CHLORIDE ION
lig 29
NO3
A
1029 4NITRATE ION
lig 30
EDO
A
1030 41,2-ETHANEDIOL
lig 31
NO3
A
1031 4NITRATE ION
lig 32
EDO
A
1032 41,2-ETHANEDIOL
lig 33
EDO
A
1033 41,2-ETHANEDIOL