Analysis of Ligand-Protein Contacts in PDB entry:
5GOI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 140 ligands in PDB entry 5GOI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DNE
C
1 8D-NORLEUCINE
lig 2
DGN
C
2 9D-GLUTAMINE
lig 3
DIL
C
3 8D-ISOLEUCINE
lig 4
DPN
C
4 11D-PHENYLALANINE
lig 5
DVA
C
5 7D-VALINE
lig 6
DLY
C
6 9D-LYSINE
lig 7
DTH
C
7 7D-THREONINE
lig 8
DLE
C
8 8D-LEUCINE
lig 9
DTH
C
9 7D-THREONINE
lig 10
DLY
C
11 9D-LYSINE
lig 11
DTH
C
12 7D-THREONINE
lig 12
DIL
C
13 8D-ISOLEUCINE
lig 13
DTH
C
14 7D-THREONINE
lig 14
DLE
C
15 8D-LEUCINE
lig 15
DGL
C
16 9D-GLUTAMIC ACID
lig 16
DVA
C
17 7D-VALINE
lig 17
DGL
C
18 9D-GLUTAMIC ACID
lig 18
DPR
C
19 7D-PROLINE
lig 19
DSN
C
20 6D-SERINE
lig 20
DAS
C
21 8D-ASPARTIC ACID
lig 21
DTH
C
22 7D-THREONINE
lig 22
DIL
C
23 8D-ISOLEUCINE
lig 23
DGL
C
24 9D-GLUTAMIC ACID
lig 24
DSG
C
25 8D-ASPARAGINE
lig 25
DVA
C
26 7D-VALINE
lig 26
DLY
C
27 9D-LYSINE
lig 27
DAL
C
28 5D-ALANINE
lig 28
DLY
C
29 9D-LYSINE
lig 29
DIL
C
30 8D-ISOLEUCINE
lig 30
DGN
C
31 9D-GLUTAMINE
lig 31
DAS
C
32 8D-ASPARTIC ACID
lig 32
DLY
C
33 9D-LYSINE
lig 33
DGL
C
34 9D-GLUTAMIC ACID
lig 34
DIL
C
36 8D-ISOLEUCINE
lig 35
DPR
C
37 7D-PROLINE
lig 36
DPR
C
38 7D-PROLINE
lig 37
DAS
C
39 8D-ASPARTIC ACID
lig 38
DGN
C
40 9D-GLUTAMINE
lig 39
DGN
C
41 9D-GLUTAMINE
lig 40
DAR
C
42 11D-ARGININE
lig 41
DLE
C
43 8D-LEUCINE
lig 42
DIL
C
44 8D-ISOLEUCINE
lig 43
DPN
C
45 11D-PHENYLALANINE
lig 44
DAL
C
46 5D-ALANINE
lig 45
DLY
C
48 9D-LYSINE
lig 46
DGN
C
49 9D-GLUTAMINE
lig 47
DLE
C
50 8D-LEUCINE
lig 48
DGL
C
51 9D-GLUTAMIC ACID
lig 49
DAS
C
52 8D-ASPARTIC ACID
lig 50
DAR
C
54 11D-ARGININE
lig 51
DTH
C
55 7D-THREONINE
lig 52
DLE
C
56 8D-LEUCINE
lig 53
DSN
C
57 6D-SERINE
lig 54
DAS
C
58 8D-ASPARTIC ACID
lig 55
DTY
C
59 12D-TYROSINE
lig 56
DSG
C
60 8D-ASPARAGINE
lig 57
DIL
C
61 8D-ISOLEUCINE
lig 58
DGN
C
62 9D-GLUTAMINE
lig 59
DLY
C
63 9D-LYSINE
lig 60
DGL
C
64 9D-GLUTAMIC ACID
lig 61
DSN
C
65 6D-SERINE
lig 62
DTH
C
66 7D-THREONINE
lig 63
DLE
C
67 8D-LEUCINE
lig 64
DHI
C
68 10D-HISTIDINE
lig 65
DLE
C
69 8D-LEUCINE
lig 66
DVA
C
70 7D-VALINE
lig 67
DLE
C
71 8D-LEUCINE
lig 68
DAR
C
72 11D-ARGININE
lig 69
DLE
C
73 8D-LEUCINE
lig 70
DAR
C
74 11D-ARGININE
lig 71
DNE
D
1 8D-NORLEUCINE
lig 72
DGN
D
2 9D-GLUTAMINE
lig 73
DIL
D
3 8D-ISOLEUCINE
lig 74
DPN
D
4 11D-PHENYLALANINE
lig 75
DVA
D
5 7D-VALINE
lig 76
DLY
D
6 9D-LYSINE
lig 77
DTH
D
7 7D-THREONINE
lig 78
DLE
D
8 8D-LEUCINE
lig 79
DTH
D
9 7D-THREONINE
lig 80
DLY
D
11 9D-LYSINE
lig 81
DTH
D
12 7D-THREONINE
lig 82
DIL
D
13 8D-ISOLEUCINE
lig 83
DTH
D
14 7D-THREONINE
lig 84
DLE
D
15 8D-LEUCINE
lig 85
DGL
D
16 9D-GLUTAMIC ACID
lig 86
DVA
D
17 7D-VALINE
lig 87
DGL
D
18 9D-GLUTAMIC ACID
lig 88
DPR
D
19 7D-PROLINE
lig 89
DSN
D
20 6D-SERINE
lig 90
DAS
D
21 8D-ASPARTIC ACID
lig 91
DTH
D
22 7D-THREONINE
lig 92
DIL
D
23 8D-ISOLEUCINE
lig 93
DGL
D
24 9D-GLUTAMIC ACID
lig 94
DSG
D
25 8D-ASPARAGINE
lig 95
DVA
D
26 7D-VALINE
lig 96
DLY
D
27 9D-LYSINE
lig 97
DAL
D
28 5D-ALANINE
lig 98
DLY
D
29 9D-LYSINE
lig 99
DIL
D
30 8D-ISOLEUCINE
lig 100
DGN
D
31 9D-GLUTAMINE
lig 101
DAS
D
32 8D-ASPARTIC ACID
lig 102
DLY
D
33 9D-LYSINE
lig 103
DGL
D
34 9D-GLUTAMIC ACID
lig 104
DIL
D
36 8D-ISOLEUCINE
lig 105
DPR
D
37 7D-PROLINE
lig 106
DPR
D
38 7D-PROLINE
lig 107
DAS
D
39 8D-ASPARTIC ACID
lig 108
DGN
D
40 9D-GLUTAMINE
lig 109
DGN
D
41 9D-GLUTAMINE
lig 110
DAR
D
42 11D-ARGININE
lig 111
DLE
D
43 8D-LEUCINE
lig 112
DIL
D
44 8D-ISOLEUCINE
lig 113
DPN
D
45 11D-PHENYLALANINE
lig 114
DAL
D
46 5D-ALANINE
lig 115
DLY
D
48 9D-LYSINE
lig 116
DGN
D
49 9D-GLUTAMINE
lig 117
DLE
D
50 8D-LEUCINE
lig 118
DGL
D
51 9D-GLUTAMIC ACID
lig 119
DAS
D
52 8D-ASPARTIC ACID
lig 120
DAR
D
54 11D-ARGININE
lig 121
DTH
D
55 7D-THREONINE
lig 122
DLE
D
56 8D-LEUCINE
lig 123
DSN
D
57 6D-SERINE
lig 124
DAS
D
58 8D-ASPARTIC ACID
lig 125
DTY
D
59 12D-TYROSINE
lig 126
DSG
D
60 8D-ASPARAGINE
lig 127
DIL
D
61 8D-ISOLEUCINE
lig 128
DGN
D
62 9D-GLUTAMINE
lig 129
DLY
D
63 9D-LYSINE
lig 130
DGL
D
64 9D-GLUTAMIC ACID
lig 131
DSN
D
65 6D-SERINE
lig 132
DTH
D
66 7D-THREONINE
lig 133
DLE
D
67 8D-LEUCINE
lig 134
DHI
D
68 10D-HISTIDINE
lig 135
DLE
D
69 8D-LEUCINE
lig 136
DVA
D
70 7D-VALINE
lig 137
DLE
D
71 8D-LEUCINE
lig 138
DAR
D
72 11D-ARGININE
lig 139
DLE
D
73 8D-LEUCINE
lig 140
DAR
D
74 11D-ARGININE