Analysis of Ligand-Protein Contacts in PDB entry:
5JBY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 192 ligands in PDB entry 5JBY. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DNE
B
1 8D-NORLEUCINE
lig 2
DGN
B
2 9D-GLUTAMINE
lig 3
DIL
B
3 8D-ISOLEUCINE
lig 4
DPN
B
4 11D-PHENYLALANINE
lig 5
DVA
B
5 7D-VALINE
lig 6
DLY
B
6 9D-LYSINE
lig 7
DTH
B
7 7D-THREONINE
lig 8
DLY
B
11 9D-LYSINE
lig 9
DTH
B
12 7D-THREONINE
lig 10
DIL
B
13 8D-ISOLEUCINE
lig 11
DTH
B
14 7D-THREONINE
lig 12
DLE
B
15 8D-LEUCINE
lig 13
DGL
B
16 9D-GLUTAMIC ACID
lig 14
DVA
B
17 7D-VALINE
lig 15
DGL
B
18 9D-GLUTAMIC ACID
lig 16
DPR
B
19 7D-PROLINE
lig 17
DSN
B
20 6D-SERINE
lig 18
DAS
B
21 8D-ASPARTIC ACID
lig 19
DTH
B
22 7D-THREONINE
lig 20
DIL
B
23 8D-ISOLEUCINE
lig 21
DGL
B
24 9D-GLUTAMIC ACID
lig 22
DSG
B
25 8D-ASPARAGINE
lig 23
DVA
B
26 7D-VALINE
lig 24
DLY
B
27 9D-LYSINE
lig 25
DAL
B
28 5D-ALANINE
lig 26
DLY
B
29 9D-LYSINE
lig 27
DIL
B
30 8D-ISOLEUCINE
lig 28
DGN
B
31 9D-GLUTAMINE
lig 29
DAS
B
32 8D-ASPARTIC ACID
lig 30
DLY
B
33 9D-LYSINE
lig 31
DGL
B
34 9D-GLUTAMIC ACID
lig 32
DIL
B
36 8D-ISOLEUCINE
lig 33
DPR
B
37 7D-PROLINE
lig 34
DPR
B
38 7D-PROLINE
lig 35
DAS
B
39 8D-ASPARTIC ACID
lig 36
DGN
B
40 9D-GLUTAMINE
lig 37
DGN
B
41 9D-GLUTAMINE
lig 38
DAR
B
42 11D-ARGININE
lig 39
DLE
B
43 8D-LEUCINE
lig 40
DIL
B
44 8D-ISOLEUCINE
lig 41
DPN
B
45 11D-PHENYLALANINE
lig 42
DAL
B
46 5D-ALANINE
lig 43
DLY
B
48 9D-LYSINE
lig 44
DGN
B
49 9D-GLUTAMINE
lig 45
DLE
B
50 8D-LEUCINE
lig 46
DGL
B
51 9D-GLUTAMIC ACID
lig 47
DAS
B
52 8D-ASPARTIC ACID
lig 48
DAR
B
54 11D-ARGININE
lig 49
DTH
B
55 7D-THREONINE
lig 50
DLE
B
56 8D-LEUCINE
lig 51
DSN
B
57 6D-SERINE
lig 52
DAS
B
58 8D-ASPARTIC ACID
lig 53
DTY
B
59 12D-TYROSINE
lig 54
DSG
B
60 8D-ASPARAGINE
lig 55
DIL
B
61 8D-ISOLEUCINE
lig 56
DGN
B
62 9D-GLUTAMINE
lig 57
DLY
B
63 9D-LYSINE
lig 58
DGL
B
64 9D-GLUTAMIC ACID
lig 59
DSN
B
65 6D-SERINE
lig 60
DTH
B
66 7D-THREONINE
lig 61
DLE
B
67 8D-LEUCINE
lig 62
DHI
B
68 10D-HISTIDINE
lig 63
DLE
B
69 8D-LEUCINE
lig 64
DVA
B
70 7D-VALINE
lig 65
DNE
D
1 8D-NORLEUCINE
lig 66
DGN
D
2 9D-GLUTAMINE
lig 67
DIL
D
3 8D-ISOLEUCINE
lig 68
DPN
D
4 11D-PHENYLALANINE
lig 69
DVA
D
5 7D-VALINE
lig 70
DLY
D
6 9D-LYSINE
lig 71
DTH
D
7 7D-THREONINE
lig 72
DLY
D
11 9D-LYSINE
lig 73
DTH
D
12 7D-THREONINE
lig 74
DIL
D
13 8D-ISOLEUCINE
lig 75
DTH
D
14 7D-THREONINE
lig 76
DLE
D
15 8D-LEUCINE
lig 77
DGL
D
16 9D-GLUTAMIC ACID
lig 78
DVA
D
17 7D-VALINE
lig 79
DGL
D
18 9D-GLUTAMIC ACID
lig 80
DPR
D
19 7D-PROLINE
lig 81
DSN
D
20 6D-SERINE
lig 82
DAS
D
21 8D-ASPARTIC ACID
lig 83
DTH
D
22 7D-THREONINE
lig 84
DIL
D
23 8D-ISOLEUCINE
lig 85
DGL
D
24 9D-GLUTAMIC ACID
lig 86
DSG
D
25 8D-ASPARAGINE
lig 87
DVA
D
26 7D-VALINE
lig 88
DLY
D
27 9D-LYSINE
lig 89
DAL
D
28 5D-ALANINE
lig 90
DLY
D
29 9D-LYSINE
lig 91
DIL
D
30 8D-ISOLEUCINE
lig 92
DGN
D
31 9D-GLUTAMINE
lig 93
DAS
D
32 8D-ASPARTIC ACID
lig 94
DLY
D
33 9D-LYSINE
lig 95
DGL
D
34 9D-GLUTAMIC ACID
lig 96
DIL
D
36 8D-ISOLEUCINE
lig 97
DPR
D
37 7D-PROLINE
lig 98
DPR
D
38 7D-PROLINE
lig 99
DAS
D
39 8D-ASPARTIC ACID
lig 100
DGN
D
40 9D-GLUTAMINE
lig 101
DGN
D
41 9D-GLUTAMINE
lig 102
DAR
D
42 11D-ARGININE
lig 103
DLE
D
43 8D-LEUCINE
lig 104
DIL
D
44 8D-ISOLEUCINE
lig 105
DPN
D
45 11D-PHENYLALANINE
lig 106
DAL
D
46 5D-ALANINE
lig 107
DLY
D
48 9D-LYSINE
lig 108
DGN
D
49 9D-GLUTAMINE
lig 109
DLE
D
50 8D-LEUCINE
lig 110
DGL
D
51 9D-GLUTAMIC ACID
lig 111
DAS
D
52 8D-ASPARTIC ACID
lig 112
DAR
D
54 11D-ARGININE
lig 113
DTH
D
55 7D-THREONINE
lig 114
DLE
D
56 8D-LEUCINE
lig 115
DSN
D
57 6D-SERINE
lig 116
DAS
D
58 8D-ASPARTIC ACID
lig 117
DTY
D
59 12D-TYROSINE
lig 118
DSG
D
60 8D-ASPARAGINE
lig 119
DIL
D
61 8D-ISOLEUCINE
lig 120
DGN
D
62 9D-GLUTAMINE
lig 121
DLY
D
63 9D-LYSINE
lig 122
DGL
D
64 9D-GLUTAMIC ACID
lig 123
DSN
D
65 6D-SERINE
lig 124
DTH
D
66 7D-THREONINE
lig 125
DLE
D
67 8D-LEUCINE
lig 126
DHI
D
68 10D-HISTIDINE
lig 127
DLE
D
69 8D-LEUCINE
lig 128
DVA
D
70 7D-VALINE
lig 129
DNE
F
1 8D-NORLEUCINE
lig 130
DGN
F
2 9D-GLUTAMINE
lig 131
DIL
F
3 8D-ISOLEUCINE
lig 132
DPN
F
4 11D-PHENYLALANINE
lig 133
DVA
F
5 7D-VALINE
lig 134
DLY
F
6 9D-LYSINE
lig 135
DTH
F
7 7D-THREONINE
lig 136
DTH
F
9 7D-THREONINE
lig 137
DTH
F
12 7D-THREONINE
lig 138
DIL
F
13 8D-ISOLEUCINE
lig 139
DTH
F
14 7D-THREONINE
lig 140
DLE
F
15 8D-LEUCINE
lig 141
DGL
F
16 9D-GLUTAMIC ACID
lig 142
DVA
F
17 7D-VALINE
lig 143
DGL
F
18 9D-GLUTAMIC ACID
lig 144
DPR
F
19 7D-PROLINE
lig 145
DSN
F
20 6D-SERINE
lig 146
DAS
F
21 8D-ASPARTIC ACID
lig 147
DTH
F
22 7D-THREONINE
lig 148
DIL
F
23 8D-ISOLEUCINE
lig 149
DGL
F
24 9D-GLUTAMIC ACID
lig 150
DSG
F
25 8D-ASPARAGINE
lig 151
DVA
F
26 7D-VALINE
lig 152
DLY
F
27 9D-LYSINE
lig 153
DAL
F
28 5D-ALANINE
lig 154
DLY
F
29 9D-LYSINE
lig 155
DIL
F
30 8D-ISOLEUCINE
lig 156
DGN
F
31 9D-GLUTAMINE
lig 157
DAS
F
32 8D-ASPARTIC ACID
lig 158
DLY
F
33 9D-LYSINE
lig 159
DGL
F
34 9D-GLUTAMIC ACID
lig 160
DIL
F
36 8D-ISOLEUCINE
lig 161
DPR
F
37 7D-PROLINE
lig 162
DPR
F
38 7D-PROLINE
lig 163
DAS
F
39 8D-ASPARTIC ACID
lig 164
DGN
F
40 9D-GLUTAMINE
lig 165
DGN
F
41 9D-GLUTAMINE
lig 166
DAR
F
42 11D-ARGININE
lig 167
DLE
F
43 8D-LEUCINE
lig 168
DIL
F
44 8D-ISOLEUCINE
lig 169
DPN
F
45 11D-PHENYLALANINE
lig 170
DAL
F
46 5D-ALANINE
lig 171
DLY
F
48 9D-LYSINE
lig 172
DGN
F
49 9D-GLUTAMINE
lig 173
DLE
F
50 8D-LEUCINE
lig 174
DGL
F
51 9D-GLUTAMIC ACID
lig 175
DAS
F
52 8D-ASPARTIC ACID
lig 176
DAR
F
54 11D-ARGININE
lig 177
DTH
F
55 7D-THREONINE
lig 178
DLE
F
56 8D-LEUCINE
lig 179
DSN
F
57 6D-SERINE
lig 180
DAS
F
58 8D-ASPARTIC ACID
lig 181
DTY
F
59 12D-TYROSINE
lig 182
DSG
F
60 8D-ASPARAGINE
lig 183
DIL
F
61 8D-ISOLEUCINE
lig 184
DGN
F
62 9D-GLUTAMINE
lig 185
DLY
F
63 9D-LYSINE
lig 186
DGL
F
64 9D-GLUTAMIC ACID
lig 187
DSN
F
65 6D-SERINE
lig 188
DTH
F
66 7D-THREONINE
lig 189
DLE
F
67 8D-LEUCINE
lig 190
DHI
F
68 10D-HISTIDINE
lig 191
DLE
F
69 8D-LEUCINE
lig 192
DVA
F
70 7D-VALINE