Analysis of Ligand-Protein Contacts in PDB entry:
5JDG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 27 ligands in PDB entry 5JDG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NA
A
401 1SODIUM ION
lig 2
NA
A
402 1SODIUM ION
lig 3
1PE
A
403 13PENTAETHYLENE GLYCOL
lig 4
PEG
A
404 7DI(HYDROXYETHYL)ETHER
lig 5
1PE
A
405 4PENTAETHYLENE GLYCOL
lig 6
1PE
A
406 4PENTAETHYLENE GLYCOL
lig 7
1PE
A
407 4PENTAETHYLENE GLYCOL
lig 8
OLC
A
408 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 9
OLC
A
409 8(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 10
OLC
A
410 9(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 11
MYS
A
411 5PENTADECANE
lig 12
MYS
A
412 15PENTADECANE
lig 13
MYS
A
413 8PENTADECANE
lig 14
MYS
A
414 10PENTADECANE
lig 15
MYS
A
415 12PENTADECANE
lig 16
MYS
A
416 8PENTADECANE
lig 17
MYS
A
417 5PENTADECANE
lig 18
MYS
A
418 5PENTADECANE
lig 19
MYS
A
419 5PENTADECANE
lig 20
MYS
A
420 10PENTADECANE
lig 21
MYS
A
421 4PENTADECANE
lig 22
MYS
A
422 4PENTADECANE
lig 23
MYS
A
423 4PENTADECANE
lig 24
MYS
A
424 3PENTADECANE
lig 25
MYS
A
425 3PENTADECANE
lig 26
MYS
A
426 3PENTADECANE
lig 27
CA
A
427 1CALCIUM ION