Analysis of Ligand-Protein Contacts in PDB entry:
5K8D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 5K8D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 10
BMA
E
4 11BETA-D-MANNOPYRANOSE
lig 11
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 14
CA
A
805 1CALCIUM ION
lig 15
CA
A
806 1CALCIUM ION
lig 16
CA
A
807 1CALCIUM ION
lig 17
CU
A
808 1COPPER (II) ION
lig 18
CU
B
2610 1COPPER (II) ION