Analysis of Ligand-Protein Contacts in PDB entry:
5KAF

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 180 ligands in PDB entry 5KAF. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	FME	I	1	10	N-FORMYLMETHIONINE
lig 2	FME	M	1	10	N-FORMYLMETHIONINE
lig 3	FME	T	1	10	N-FORMYLMETHIONINE
lig 4	FME	i	1	10	N-FORMYLMETHIONINE
lig 5	FME	m	1	10	N-FORMYLMETHIONINE
lig 6	FME	t	1	10	N-FORMYLMETHIONINE
lig 7	OEX	A	601	10	CA-MN4-O5 CLUSTER
lig 8	FE2	A	602	1	FE (II) ION
lig 9	SQD	A	603	52	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 10	CL	A	604	1	CHLORIDE ION
lig 11	CL	A	605	1	CHLORIDE ION
lig 12	CLA	A	606	65	CHLOROPHYLL A
lig 13	CLA	A	607	57	CHLOROPHYLL A
lig 14	PHO	A	608	64	PHEOPHYTIN A
lig 15	CLA	A	609	65	CHLOROPHYLL A
lig 16	BCR	A	610	40	BETA-CAROTENE
lig 17	PL9	A	611	55	BENZOQUINONE
lig 18	LMG	A	612	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 19	LMG	A	613	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 20	UNL	A	614	7	UNKNOWN LIGAND
lig 21	CLA	A	615	65	CHLOROPHYLL A
lig 22	LHG	A	616	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 23	LHG	A	617	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 24	LHG	A	618	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 25	SQD	A	619	40	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 26	BCT	A	620	4	BICARBONATE ION
lig 27	CLA	B	601	65	CHLOROPHYLL A
lig 28	CLA	B	602	65	CHLOROPHYLL A
lig 29	CLA	B	603	65	CHLOROPHYLL A
lig 30	CLA	B	604	65	CHLOROPHYLL A
lig 31	CLA	B	605	65	CHLOROPHYLL A
lig 32	CLA	B	606	65	CHLOROPHYLL A
lig 33	CLA	B	607	65	CHLOROPHYLL A
lig 34	CLA	B	608	65	CHLOROPHYLL A
lig 35	CLA	B	609	65	CHLOROPHYLL A
lig 36	CLA	B	610	65	CHLOROPHYLL A
lig 37	CLA	B	611	65	CHLOROPHYLL A
lig 38	CLA	B	612	65	CHLOROPHYLL A
lig 39	CLA	B	613	65	CHLOROPHYLL A
lig 40	CLA	B	614	65	CHLOROPHYLL A
lig 41	CLA	B	615	65	CHLOROPHYLL A
lig 42	CLA	B	616	65	CHLOROPHYLL A
lig 43	BCR	B	617	40	BETA-CAROTENE
lig 44	BCR	B	618	40	BETA-CAROTENE
lig 45	BCR	B	619	40	BETA-CAROTENE
lig 46	LMG	B	620	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 47	LMG	B	621	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 48	UNL	B	622	6	UNKNOWN LIGAND
lig 49	UNL	B	623	11	UNKNOWN LIGAND
lig 50	UNL	B	624	11	UNKNOWN LIGAND
lig 51	LMG	B	625	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 52	SQD	B	626	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 53	BCR	B	627	40	BETA-CAROTENE
lig 54	CLA	C	501	65	CHLOROPHYLL A
lig 55	CLA	C	502	65	CHLOROPHYLL A
lig 56	CLA	C	503	65	CHLOROPHYLL A
lig 57	CLA	C	504	65	CHLOROPHYLL A
lig 58	CLA	C	505	65	CHLOROPHYLL A
lig 59	CLA	C	506	65	CHLOROPHYLL A
lig 60	CLA	C	507	65	CHLOROPHYLL A
lig 61	CLA	C	508	65	CHLOROPHYLL A
lig 62	CLA	C	509	65	CHLOROPHYLL A
lig 63	CLA	C	510	65	CHLOROPHYLL A
lig 64	CLA	C	511	65	CHLOROPHYLL A
lig 65	CLA	C	512	65	CHLOROPHYLL A
lig 66	CLA	C	513	65	CHLOROPHYLL A
lig 67	BCR	C	514	40	BETA-CAROTENE
lig 68	BCR	C	515	40	BETA-CAROTENE
lig 69	DGD	C	516	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 70	DGD	C	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 71	DGD	C	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 72	LMG	C	519	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 73	LMG	C	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 74	UNL	C	521	9	UNKNOWN LIGAND
lig 75	PHO	D	401	64	PHEOPHYTIN A
lig 76	CLA	D	402	65	CHLOROPHYLL A
lig 77	CLA	D	403	65	CHLOROPHYLL A
lig 78	BCR	D	404	40	BETA-CAROTENE
lig 79	LMG	D	405	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 80	LHG	D	406	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 81	PL9	D	407	55	BENZOQUINONE
lig 82	SQD	D	408	47	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 83	SQD	D	409	43	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 84	HEM	E	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 85	UNL	H	101	8	UNKNOWN LIGAND
lig 86	BCR	H	102	40	BETA-CAROTENE
lig 87	DGD	H	103	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 88	SQD	I	101	40	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 89	BCR	K	101	40	BETA-CAROTENE
lig 90	LHG	L	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 91	UNL	M	101	6	UNKNOWN LIGAND
lig 92	UNL	M	102	17	UNKNOWN LIGAND
lig 93	BCR	T	101	40	BETA-CAROTENE
lig 94	HEC	V	201	43	HEME C
lig 95	BCR	Y	101	40	BETA-CAROTENE
lig 96	OEX	a	601	10	CA-MN4-O5 CLUSTER
lig 97	FE2	a	602	1	FE (II) ION
lig 98	CL	a	603	1	CHLORIDE ION
lig 99	CL	a	604	1	CHLORIDE ION
lig 100	BCT	a	605	4	BICARBONATE ION
lig 101	CLA	a	606	65	CHLOROPHYLL A
lig 102	CLA	a	607	59	CHLOROPHYLL A
lig 103	PHO	a	608	64	PHEOPHYTIN A
lig 104	CLA	a	609	65	CHLOROPHYLL A
lig 105	BCR	a	610	40	BETA-CAROTENE
lig 106	PL9	a	611	55	BENZOQUINONE
lig 107	CLA	a	612	65	CHLOROPHYLL A
lig 108	LHG	a	613	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 109	LHG	a	614	35	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 110	LHG	a	615	42	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 111	SQD	b	601	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 112	UNL	b	602	13	UNKNOWN LIGAND
lig 113	UNL	b	603	13	UNKNOWN LIGAND
lig 114	CLA	b	604	65	CHLOROPHYLL A
lig 115	CLA	b	605	65	CHLOROPHYLL A
lig 116	CLA	b	606	65	CHLOROPHYLL A
lig 117	CLA	b	607	65	CHLOROPHYLL A
lig 118	CLA	b	608	65	CHLOROPHYLL A
lig 119	CLA	b	609	65	CHLOROPHYLL A
lig 120	CLA	b	610	65	CHLOROPHYLL A
lig 121	CLA	b	611	65	CHLOROPHYLL A
lig 122	CLA	b	612	65	CHLOROPHYLL A
lig 123	CLA	b	613	65	CHLOROPHYLL A
lig 124	CLA	b	614	65	CHLOROPHYLL A
lig 125	CLA	b	615	65	CHLOROPHYLL A
lig 126	CLA	b	616	65	CHLOROPHYLL A
lig 127	CLA	b	617	65	CHLOROPHYLL A
lig 128	CLA	b	618	65	CHLOROPHYLL A
lig 129	CLA	b	619	65	CHLOROPHYLL A
lig 130	BCR	b	620	40	BETA-CAROTENE
lig 131	BCR	b	621	40	BETA-CAROTENE
lig 132	BCR	b	622	40	BETA-CAROTENE
lig 133	LMG	b	623	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 134	LMG	b	624	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 135	LMG	b	625	9	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 136	SQD	c	501	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 137	LMG	c	502	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 138	CLA	c	503	65	CHLOROPHYLL A
lig 139	CLA	c	504	65	CHLOROPHYLL A
lig 140	CLA	c	505	65	CHLOROPHYLL A
lig 141	CLA	c	506	65	CHLOROPHYLL A
lig 142	CLA	c	507	65	CHLOROPHYLL A
lig 143	CLA	c	508	65	CHLOROPHYLL A
lig 144	CLA	c	509	65	CHLOROPHYLL A
lig 145	CLA	c	510	58	CHLOROPHYLL A
lig 146	CLA	c	511	65	CHLOROPHYLL A
lig 147	CLA	c	512	65	CHLOROPHYLL A
lig 148	CLA	c	513	65	CHLOROPHYLL A
lig 149	CLA	c	514	65	CHLOROPHYLL A
lig 150	CLA	c	515	65	CHLOROPHYLL A
lig 151	BCR	c	516	40	BETA-CAROTENE
lig 152	BCR	c	517	40	BETA-CAROTENE
lig 153	DGD	c	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 154	DGD	c	519	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 155	DGD	c	520	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 156	LMG	c	521	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 157	LMG	c	522	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 158	PHO	d	401	64	PHEOPHYTIN A
lig 159	UNL	d	402	22	UNKNOWN LIGAND
lig 160	CLA	d	403	65	CHLOROPHYLL A
lig 161	CLA	d	404	65	CHLOROPHYLL A
lig 162	BCR	d	405	40	BETA-CAROTENE
lig 163	LMG	d	406	42	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 164	LHG	d	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 165	PL9	d	408	55	BENZOQUINONE
lig 166	LMG	d	409	40	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 167	HEM	e	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 168	SQD	f	101	43	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 169	BCR	h	101	40	BETA-CAROTENE
lig 170	DGD	h	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 171	UNL	i	101	12	UNKNOWN LIGAND
lig 172	UNL	j	101	9	UNKNOWN LIGAND
lig 173	BCR	k	101	40	BETA-CAROTENE
lig 174	LHG	l	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 175	UNL	m	101	5	UNKNOWN LIGAND
lig 176	UNL	m	102	16	UNKNOWN LIGAND
lig 177	UNL	t	101	10	UNKNOWN LIGAND
lig 178	HEC	v	201	43	HEME C
lig 179	BCR	y	101	40	BETA-CAROTENE
lig 180	UNL	z	101	11	UNKNOWN LIGAND

Analysis of Ligand-Protein Contacts in PDB entry: 5KAF

Analysis of Ligand-Protein Contacts in PDB entry:
5KAF