Analysis of Ligand-Protein Contacts in PDB entry:
5KAI

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 186 ligands in PDB entry 5KAI. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	FME	I	1	10	N-FORMYLMETHIONINE
lig 2	FME	M	1	10	N-FORMYLMETHIONINE
lig 3	FME	T	1	10	N-FORMYLMETHIONINE
lig 4	FME	i	1	10	N-FORMYLMETHIONINE
lig 5	FME	m	1	10	N-FORMYLMETHIONINE
lig 6	FME	t	1	10	N-FORMYLMETHIONINE
lig 7	OEX	A	601	10	CA-MN4-O5 CLUSTER
lig 8	FE2	A	602	1	FE (II) ION
lig 9	LMG	A	603	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 10	CL	A	604	1	CHLORIDE ION
lig 11	CL	A	605	1	CHLORIDE ION
lig 12	CLA	A	606	65	CHLOROPHYLL A
lig 13	CLA	A	607	65	CHLOROPHYLL A
lig 14	PHO	A	608	64	PHEOPHYTIN A
lig 15	CLA	A	609	54	CHLOROPHYLL A
lig 16	BCR	A	610	40	BETA-CAROTENE
lig 17	PL9	A	611	55	BENZOQUINONE
lig 18	SQD	A	612	52	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 19	UNL	A	613	7	UNKNOWN LIGAND
lig 20	SQD	A	614	40	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 21	BCT	A	615	4	BICARBONATE ION
lig 22	UNL	B	601	12	UNKNOWN LIGAND
lig 23	CLA	B	602	65	CHLOROPHYLL A
lig 24	CLA	B	603	65	CHLOROPHYLL A
lig 25	CLA	B	604	65	CHLOROPHYLL A
lig 26	CLA	B	605	65	CHLOROPHYLL A
lig 27	CLA	B	606	65	CHLOROPHYLL A
lig 28	CLA	B	607	65	CHLOROPHYLL A
lig 29	CLA	B	608	65	CHLOROPHYLL A
lig 30	CLA	B	609	65	CHLOROPHYLL A
lig 31	CLA	B	610	65	CHLOROPHYLL A
lig 32	CLA	B	611	65	CHLOROPHYLL A
lig 33	CLA	B	612	65	CHLOROPHYLL A
lig 34	CLA	B	613	65	CHLOROPHYLL A
lig 35	CLA	B	614	65	CHLOROPHYLL A
lig 36	CLA	B	615	65	CHLOROPHYLL A
lig 37	CLA	B	616	65	CHLOROPHYLL A
lig 38	CLA	B	617	65	CHLOROPHYLL A
lig 39	BCR	B	618	40	BETA-CAROTENE
lig 40	BCR	B	619	40	BETA-CAROTENE
lig 41	BCR	B	620	40	BETA-CAROTENE
lig 42	LMG	B	621	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 43	UNL	B	622	6	UNKNOWN LIGAND
lig 44	SQD	B	623	47	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 45	UNL	B	624	11	UNKNOWN LIGAND
lig 46	LHG	B	625	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 47	SQD	B	626	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 48	LMG	C	501	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 49	CLA	C	502	65	CHLOROPHYLL A
lig 50	CLA	C	503	65	CHLOROPHYLL A
lig 51	CLA	C	504	65	CHLOROPHYLL A
lig 52	CLA	C	505	65	CHLOROPHYLL A
lig 53	CLA	C	506	65	CHLOROPHYLL A
lig 54	CLA	C	507	65	CHLOROPHYLL A
lig 55	CLA	C	508	65	CHLOROPHYLL A
lig 56	CLA	C	509	65	CHLOROPHYLL A
lig 57	CLA	C	510	65	CHLOROPHYLL A
lig 58	CLA	C	511	65	CHLOROPHYLL A
lig 59	CLA	C	512	65	CHLOROPHYLL A
lig 60	CLA	C	513	65	CHLOROPHYLL A
lig 61	CLA	C	514	65	CHLOROPHYLL A
lig 62	BCR	C	515	40	BETA-CAROTENE
lig 63	BCR	C	516	40	BETA-CAROTENE
lig 64	DGD	C	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 65	DGD	C	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 66	DGD	C	519	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 67	LMG	C	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 68	LMG	C	521	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 69	PHO	D	401	64	PHEOPHYTIN A
lig 70	CLA	D	402	65	CHLOROPHYLL A
lig 71	CLA	D	403	65	CHLOROPHYLL A
lig 72	CLA	D	404	65	CHLOROPHYLL A
lig 73	BCR	D	405	40	BETA-CAROTENE
lig 74	PL9	D	406	55	BENZOQUINONE
lig 75	LHG	D	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 76	LHG	D	408	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 77	LMG	D	409	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 78	SQD	D	410	43	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 79	LHG	E	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 80	HEM	E	102	43	PROTOPORPHYRIN IX CONTAINING FE
lig 81	UNL	H	101	8	UNKNOWN LIGAND
lig 82	BCR	H	102	40	BETA-CAROTENE
lig 83	DGD	H	103	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 84	UNL	I	101	9	UNKNOWN LIGAND
lig 85	SQD	I	102	40	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 86	BCR	K	101	40	BETA-CAROTENE
lig 87	LHG	L	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 88	LMG	M	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 89	UNL	M	102	6	UNKNOWN LIGAND
lig 90	UNL	M	103	16	UNKNOWN LIGAND
lig 91	HEC	V	201	43	HEME C
lig 92	BCR	Y	101	40	BETA-CAROTENE
lig 93	LMG	a	701	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 94	OEX	a	702	10	CA-MN4-O5 CLUSTER
lig 95	FE2	a	703	1	FE (II) ION
lig 96	CL	a	704	1	CHLORIDE ION
lig 97	CL	a	705	1	CHLORIDE ION
lig 98	BCT	a	706	4	BICARBONATE ION
lig 99	CLA	a	707	65	CHLOROPHYLL A
lig 100	CLA	a	708	65	CHLOROPHYLL A
lig 101	PHO	a	709	64	PHEOPHYTIN A
lig 102	PHO	a	710	64	PHEOPHYTIN A
lig 103	CLA	a	711	65	CHLOROPHYLL A
lig 104	BCR	a	712	40	BETA-CAROTENE
lig 105	PL9	a	713	55	BENZOQUINONE
lig 106	SQD	a	714	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 107	LMG	a	715	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 108	UNL	a	716	4	UNKNOWN LIGAND
lig 109	UNL	a	717	7	UNKNOWN LIGAND
lig 110	UNL	a	718	13	UNKNOWN LIGAND
lig 111	CLA	a	719	65	CHLOROPHYLL A
lig 112	LHG	a	720	39	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 113	SQD	b	601	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 114	BCR	b	602	40	BETA-CAROTENE
lig 115	UNL	b	603	11	UNKNOWN LIGAND
lig 116	UNL	b	604	11	UNKNOWN LIGAND
lig 117	UNL	b	605	13	UNKNOWN LIGAND
lig 118	UNL	b	606	13	UNKNOWN LIGAND
lig 119	CLA	b	607	65	CHLOROPHYLL A
lig 120	CLA	b	608	65	CHLOROPHYLL A
lig 121	CLA	b	609	65	CHLOROPHYLL A
lig 122	CLA	b	610	65	CHLOROPHYLL A
lig 123	CLA	b	611	65	CHLOROPHYLL A
lig 124	CLA	b	612	65	CHLOROPHYLL A
lig 125	CLA	b	613	65	CHLOROPHYLL A
lig 126	CLA	b	614	65	CHLOROPHYLL A
lig 127	CLA	b	615	65	CHLOROPHYLL A
lig 128	CLA	b	616	65	CHLOROPHYLL A
lig 129	CLA	b	617	65	CHLOROPHYLL A
lig 130	CLA	b	618	65	CHLOROPHYLL A
lig 131	CLA	b	619	65	CHLOROPHYLL A
lig 132	CLA	b	620	65	CHLOROPHYLL A
lig 133	CLA	b	621	65	CHLOROPHYLL A
lig 134	CLA	b	622	47	CHLOROPHYLL A
lig 135	BCR	b	623	40	BETA-CAROTENE
lig 136	BCR	b	624	40	BETA-CAROTENE
lig 137	BCR	b	625	40	BETA-CAROTENE
lig 138	LMG	b	626	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 139	LMG	b	627	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 140	LMG	b	628	9	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 141	LHG	b	629	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 142	CLA	c	501	65	CHLOROPHYLL A
lig 143	CLA	c	502	65	CHLOROPHYLL A
lig 144	CLA	c	503	65	CHLOROPHYLL A
lig 145	CLA	c	504	58	CHLOROPHYLL A
lig 146	CLA	c	505	65	CHLOROPHYLL A
lig 147	CLA	c	506	65	CHLOROPHYLL A
lig 148	CLA	c	507	65	CHLOROPHYLL A
lig 149	CLA	c	508	65	CHLOROPHYLL A
lig 150	CLA	c	509	65	CHLOROPHYLL A
lig 151	CLA	c	510	65	CHLOROPHYLL A
lig 152	CLA	c	511	65	CHLOROPHYLL A
lig 153	CLA	c	512	65	CHLOROPHYLL A
lig 154	CLA	c	513	65	CHLOROPHYLL A
lig 155	BCR	c	514	40	BETA-CAROTENE
lig 156	BCR	c	515	40	BETA-CAROTENE
lig 157	DGD	c	516	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 158	DGD	c	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 159	DGD	c	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 160	LMG	c	519	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 161	LMG	c	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 162	UNL	d	401	22	UNKNOWN LIGAND
lig 163	CLA	d	402	65	CHLOROPHYLL A
lig 164	CLA	d	403	65	CHLOROPHYLL A
lig 165	BCR	d	404	40	BETA-CAROTENE
lig 166	PL9	d	405	55	BENZOQUINONE
lig 167	LHG	d	406	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 168	LHG	d	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 169	LMG	d	408	40	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 170	LHG	e	101	42	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 171	HEM	e	102	43	PROTOPORPHYRIN IX CONTAINING FE
lig 172	LMG	f	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 173	SQD	f	102	41	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 174	BCR	h	101	40	BETA-CAROTENE
lig 175	DGD	h	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 176	UNL	i	101	22	UNKNOWN LIGAND
lig 177	UNL	j	101	9	UNKNOWN LIGAND
lig 178	BCR	k	101	40	BETA-CAROTENE
lig 179	BCR	k	102	40	BETA-CAROTENE
lig 180	UNL	m	101	5	UNKNOWN LIGAND
lig 181	UNL	m	102	12	UNKNOWN LIGAND
lig 182	UNL	t	101	10	UNKNOWN LIGAND
lig 183	UNL	t	102	5	UNKNOWN LIGAND
lig 184	BCR	t	103	40	BETA-CAROTENE
lig 185	HEC	v	201	43	HEME C
lig 186	UNL	z	101	11	UNKNOWN LIGAND

Analysis of Ligand-Protein Contacts in PDB entry: 5KAI

Analysis of Ligand-Protein Contacts in PDB entry:
5KAI