Analysis of Ligand-Protein Contacts in PDB entry:
5KMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 17 ligands in PDB entry 5KMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MC3
A
1301 61,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 2
MC3
A
1302 61,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 3
MC3
A
1303 211,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 4
MC3
A
1304 211,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 5
MC3
A
1305 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 6
MC3
A
1306 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 7
MC3
A
1307 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 8
MC3
B
1301 61,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 9
MC3
B
1302 211,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 10
MC3
B
1303 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 11
CA
C
1301 1CALCIUM ION
lig 12
MC3
C
1302 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 13
MC3
C
1303 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 14
6UB
C
1304 28AMLODIPINE
lig 15
CA
D
1301 1CALCIUM ION
lig 16
MC3
D
1302 61,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI
lig 17
MC3
D
1303 101,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLI