Analysis of Ligand-Protein Contacts in PDB entry:
5M0D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 29 ligands in PDB entry 5M0D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
B
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
B
7 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
B
8 11ALPHA-D-MANNOPYRANOSE
lig 9
IOD
A
909 1IODIDE ION
lig 10
IOD
A
910 1IODIDE ION
lig 11
IOD
A
911 1IODIDE ION
lig 12
IOD
A
912 1IODIDE ION
lig 13
IOD
A
913 1IODIDE ION
lig 14
IOD
A
914 1IODIDE ION
lig 15
IOD
A
915 1IODIDE ION
lig 16
IOD
A
916 1IODIDE ION
lig 17
IOD
A
917 1IODIDE ION
lig 18
ZN
A
918 1ZINC ION
lig 19
ZN
A
919 1ZINC ION
lig 20
CA
A
920 1CALCIUM ION
lig 21
7C8
A
921 44 CARBOXYLATE
lig 22
NA
A
922 1SODIUM ION
lig 23
SCN
A
923 3THIOCYANATE ION
lig 24
SCN
A
924 3THIOCYANATE ION
lig 25
SCN
A
925 3THIOCYANATE ION
lig 26
SCN
A
926 3THIOCYANATE ION
lig 27
GOL
A
927 6GLYCEROL
lig 28
GOL
A
928 6GLYCEROL
lig 29
GOL
A
929 6GLYCEROL