Analysis of Ligand-Protein Contacts in PDB entry:
5M5E


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 5M5E. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
A
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
A
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 7
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
G
2 10ALPHA-L-FUCOPYRANOSE
lig 11
MAN
B
309 11ALPHA-D-MANNOPYRANOSE
lig 12
SO4
B
310 5SULFATE ION
lig 13
SO4
B
311 5SULFATE ION
lig 14
CYS
B
312 7CYSTEINE
lig 15
NAG
C
303 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
C
304 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
SO4
C
305 5SULFATE ION
lig 18
SO4
D
201 5SULFATE ION