Analysis of Ligand-Protein Contacts in PDB entry:
5M8M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 66 ligands in PDB entry 5M8M. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
FUC
F
2 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
J
3 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
FUC
K
2 10ALPHA-L-FUCOPYRANOSE
lig 17
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
MAN
M
3 11ALPHA-D-MANNOPYRANOSE
lig 22
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 23
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
FUC
O
3 10ALPHA-L-FUCOPYRANOSE
lig 28
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
MAN
P
3 11ALPHA-D-MANNOPYRANOSE
lig 31
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 32
FUC
P
5 10ALPHA-L-FUCOPYRANOSE
lig 33
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
MAN
R
3 11ALPHA-D-MANNOPYRANOSE
lig 38
MAN
R
4 11ALPHA-D-MANNOPYRANOSE
lig 39
MAN
R
5 11ALPHA-D-MANNOPYRANOSE
lig 40
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
FUC
T
3 10ALPHA-L-FUCOPYRANOSE
lig 45
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
FUC
U
2 10ALPHA-L-FUCOPYRANOSE
lig 47
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 51
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
ZN
A
501 1ZINC ION
lig 54
ZN
A
502 1ZINC ION
lig 55
KOJ
A
503 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 56
ZN
B
501 1ZINC ION
lig 57
ZN
B
502 1ZINC ION
lig 58
ZN
B
503 1ZINC ION
lig 59
KOJ
B
504 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 60
ZN
C
501 1ZINC ION
lig 61
ZN
C
502 1ZINC ION
lig 62
KOJ
C
503 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 63
NAG
D
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
ZN
D
502 1ZINC ION
lig 65
ZN
D
503 1ZINC ION
lig 66
KOJ
D
504 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE