Analysis of Ligand-Protein Contacts in PDB entry:
5M8R


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 50 ligands in PDB entry 5M8R. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
F
3 10ALPHA-L-FUCOPYRANOSE
lig 7
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
MAN
H
3 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 13
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
FUC
I
3 10ALPHA-L-FUCOPYRANOSE
lig 16
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
FUC
J
3 10ALPHA-L-FUCOPYRANOSE
lig 19
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
MAN
L
3 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 25
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
FUC
M
2 10ALPHA-L-FUCOPYRANOSE
lig 27
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
A
505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
A
506 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
A
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
ZN
A
508 1ZINC ION
lig 32
ZN
A
509 1ZINC ION
lig 33
ZN
A
510 1ZINC ION
lig 34
MMS
A
511 14MIMOSINE
lig 35
NAG
B
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
B
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
ZN
B
512 1ZINC ION
lig 38
ZN
B
513 1ZINC ION
lig 39
MMS
B
514 14MIMOSINE
lig 40
NAG
C
513 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
ZN
C
514 1ZINC ION
lig 42
ZN
C
515 1ZINC ION
lig 43
MMS
C
516 14MIMOSINE
lig 44
NAG
D
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
NAG
D
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
D
505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
NAG
D
506 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
ZN
D
507 1ZINC ION
lig 49
ZN
D
508 1ZINC ION
lig 50
MMS
D
509 14MIMOSINE