Analysis of Ligand-Protein Contacts in PDB entry:
5M8S


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 62 ligands in PDB entry 5M8S. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
H
3 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
MAN
I
2 11ALPHA-D-MANNOPYRANOSE
lig 13
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
MAN
K
3 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 20
FUC
K
6 10ALPHA-L-FUCOPYRANOSE
lig 21
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
FUC
M
2 10ALPHA-L-FUCOPYRANOSE
lig 25
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
FUC
P
3 10ALPHA-L-FUCOPYRANOSE
lig 32
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
MAN
Q
3 11ALPHA-D-MANNOPYRANOSE
lig 35
MAN
Q
4 11ALPHA-D-MANNOPYRANOSE
lig 36
FUC
Q
5 10ALPHA-L-FUCOPYRANOSE
lig 37
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
MAN
S
3 11ALPHA-D-MANNOPYRANOSE
lig 42
MAN
S
4 11ALPHA-D-MANNOPYRANOSE
lig 43
MAN
S
5 11ALPHA-D-MANNOPYRANOSE
lig 44
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
URS
A
509 10N-PHENYLTHIOUREA
lig 48
ZN
A
510 1ZINC ION
lig 49
ZN
A
511 1ZINC ION
lig 50
ZN
A
512 1ZINC ION
lig 51
URS
B
516 10N-PHENYLTHIOUREA
lig 52
ZN
B
517 1ZINC ION
lig 53
ZN
B
518 1ZINC ION
lig 54
NAG
C
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
C
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
NAG
C
509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
URS
C
510 10N-PHENYLTHIOUREA
lig 58
ZN
C
511 1ZINC ION
lig 59
ZN
C
512 1ZINC ION
lig 60
URS
D
518 10N-PHENYLTHIOUREA
lig 61
ZN
D
519 1ZINC ION
lig 62
ZN
D
520 1ZINC ION