Analysis of Ligand-Protein Contacts in PDB entry:
5MDL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 12 ligands in PDB entry 5MDL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NFV
L
701 9NI-FE OXIDIZED ACTIVE CENTER
lig 2
MG
L
702 1MAGNESIUM ION
lig 3
OXY
L
703 2OXYGEN MOLECULE
lig 4
OXY
L
704 2OXYGEN MOLECULE
lig 5
OXY
L
705 2OXYGEN MOLECULE
lig 6
PEG
L
706 7DI(HYDROXYETHYL)ETHER
lig 7
SF4
S
1001 8IRON/SULFUR CLUSTER
lig 8
F3S
S
1002 7FE3-S4 CLUSTER
lig 9
F4S
S
1003 7FE4-S3 CLUSTER
lig 10
OXY
S
1004 2OXYGEN MOLECULE
lig 11
CL
S
1005 1CHLORIDE ION
lig 12
O
S
1006 1OXYGEN ATOM