Analysis of Ligand-Protein Contacts in PDB entry:
5MYD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 12 ligands in PDB entry 5MYD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
DUP
A
201 282'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHO
lig 2
MG
A
202 1MAGNESIUM ION
lig 3
MG
A
203 1MAGNESIUM ION
lig 4
DUP
B
201 282'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHO
lig 5
MG
B
202 1MAGNESIUM ION
lig 6
MG
B
203 1MAGNESIUM ION
lig 7
DUP
C
201 282'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHO
lig 8
MG
C
202 1MAGNESIUM ION
lig 9
MG
C
203 1MAGNESIUM ION
lig 10
DUP
D
201 282'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHO
lig 11
MG
D
202 1MAGNESIUM ION
lig 12
MG
D
203 1MAGNESIUM ION