Analysis of Ligand-Protein Contacts in PDB entry:
5MZ2


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 104 ligands in PDB entry 5MZ2. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
HYP
A
48 84-HYDROXYPROLINE
lig 2
CSO
A
109 7S-HYDROXYCYSTEINE
lig 3
LYO
A
150 104-HYDROXY-LYSINE
lig 4
HYP
A
155 84-HYDROXYPROLINE
lig 5
HLU
A
174 9BETA-HYDROXYLEUCINE
lig 6
LYO
A
198 104-HYDROXY-LYSINE
lig 7
KCX
A
205 12LYSINE NZ-CARBOXYLIC ACID
lig 8
M3L
A
346 12N-TRIMETHYLLYSINE
lig 9
HYP
C
48 84-HYDROXYPROLINE
lig 10
CSO
C
109 7S-HYDROXYCYSTEINE
lig 11
LYO
C
150 104-HYDROXY-LYSINE
lig 12
HYP
C
155 84-HYDROXYPROLINE
lig 13
HLU
C
174 9BETA-HYDROXYLEUCINE
lig 14
LYO
C
198 104-HYDROXY-LYSINE
lig 15
KCX
C
205 12LYSINE NZ-CARBOXYLIC ACID
lig 16
M3L
C
346 12N-TRIMETHYLLYSINE
lig 17
HYP
H
48 84-HYDROXYPROLINE
lig 18
CSO
H
109 7S-HYDROXYCYSTEINE
lig 19
LYO
H
150 104-HYDROXY-LYSINE
lig 20
HYP
H
155 84-HYDROXYPROLINE
lig 21
HLU
H
174 9BETA-HYDROXYLEUCINE
lig 22
LYO
H
198 104-HYDROXY-LYSINE
lig 23
KCX
H
205 12LYSINE NZ-CARBOXYLIC ACID
lig 24
M3L
H
346 12N-TRIMETHYLLYSINE
lig 25
HYP
F
48 84-HYDROXYPROLINE
lig 26
CSO
F
109 7S-HYDROXYCYSTEINE
lig 27
LYO
F
150 104-HYDROXY-LYSINE
lig 28
HYP
F
155 84-HYDROXYPROLINE
lig 29
HLU
F
174 9BETA-HYDROXYLEUCINE
lig 30
LYO
F
198 104-HYDROXY-LYSINE
lig 31
KCX
F
205 12LYSINE NZ-CARBOXYLIC ACID
lig 32
M3L
F
346 12N-TRIMETHYLLYSINE
lig 33
HYP
D
48 84-HYDROXYPROLINE
lig 34
CSO
D
109 7S-HYDROXYCYSTEINE
lig 35
LYO
D
150 104-HYDROXY-LYSINE
lig 36
HYP
D
155 84-HYDROXYPROLINE
lig 37
HLU
D
174 9BETA-HYDROXYLEUCINE
lig 38
LYO
D
198 104-HYDROXY-LYSINE
lig 39
KCX
D
205 12LYSINE NZ-CARBOXYLIC ACID
lig 40
M3L
D
346 12N-TRIMETHYLLYSINE
lig 41
HYP
B
48 84-HYDROXYPROLINE
lig 42
CSO
B
109 7S-HYDROXYCYSTEINE
lig 43
LYO
B
150 104-HYDROXY-LYSINE
lig 44
HYP
B
155 84-HYDROXYPROLINE
lig 45
HLU
B
174 9BETA-HYDROXYLEUCINE
lig 46
LYO
B
198 104-HYDROXY-LYSINE
lig 47
KCX
B
205 12LYSINE NZ-CARBOXYLIC ACID
lig 48
M3L
B
346 12N-TRIMETHYLLYSINE
lig 49
HYP
E
48 84-HYDROXYPROLINE
lig 50
CSO
E
109 7S-HYDROXYCYSTEINE
lig 51
LYO
E
150 104-HYDROXY-LYSINE
lig 52
HYP
E
155 84-HYDROXYPROLINE
lig 53
HLU
E
174 9BETA-HYDROXYLEUCINE
lig 54
LYO
E
198 104-HYDROXY-LYSINE
lig 55
KCX
E
205 12LYSINE NZ-CARBOXYLIC ACID
lig 56
M3L
E
346 12N-TRIMETHYLLYSINE
lig 57
HYP
G
48 84-HYDROXYPROLINE
lig 58
CSO
G
109 7S-HYDROXYCYSTEINE
lig 59
LYO
G
150 104-HYDROXY-LYSINE
lig 60
HYP
G
155 84-HYDROXYPROLINE
lig 61
HLU
G
174 9BETA-HYDROXYLEUCINE
lig 62
LYO
G
198 104-HYDROXY-LYSINE
lig 63
KCX
G
205 12LYSINE NZ-CARBOXYLIC ACID
lig 64
M3L
G
346 12N-TRIMETHYLLYSINE
lig 65
MG
A
901 1MAGNESIUM ION
lig 66
CAP
A
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 67
EDO
A
903 41,2-ETHANEDIOL
lig 68
MG
C
901 1MAGNESIUM ION
lig 69
CAP
C
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 70
MG
H
901 1MAGNESIUM ION
lig 71
CAP
H
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 72
MG
F
901 1MAGNESIUM ION
lig 73
CAP
F
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 74
EDO
F
903 41,2-ETHANEDIOL
lig 75
MG
D
901 1MAGNESIUM ION
lig 76
CAP
D
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 77
MG
B
901 1MAGNESIUM ION
lig 78
CAP
B
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 79
EDO
B
903 41,2-ETHANEDIOL
lig 80
MG
E
901 1MAGNESIUM ION
lig 81
CAP
E
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 82
MG
G
901 1MAGNESIUM ION
lig 83
CAP
G
902 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 84
MG
I
201 1MAGNESIUM ION
lig 85
EDO
I
202 41,2-ETHANEDIOL
lig 86
EDO
I
203 41,2-ETHANEDIOL
lig 87
EDO
I
204 41,2-ETHANEDIOL
lig 88
EDO
I
205 41,2-ETHANEDIOL
lig 89
EDO
O
201 41,2-ETHANEDIOL
lig 90
EDO
O
202 41,2-ETHANEDIOL
lig 91
EDO
L
201 41,2-ETHANEDIOL
lig 92
EDO
L
202 41,2-ETHANEDIOL
lig 93
EDO
L
203 41,2-ETHANEDIOL
lig 94
EDO
N
201 41,2-ETHANEDIOL
lig 95
MG
M
201 1MAGNESIUM ION
lig 96
EDO
M
202 41,2-ETHANEDIOL
lig 97
EDO
M
203 41,2-ETHANEDIOL
lig 98
EDO
M
204 41,2-ETHANEDIOL
lig 99
EDO
P
201 41,2-ETHANEDIOL
lig 100
EDO
J
201 41,2-ETHANEDIOL
lig 101
EDO
J
202 41,2-ETHANEDIOL
lig 102
EDO
J
203 41,2-ETHANEDIOL
lig 103
EDO
J
204 41,2-ETHANEDIOL
lig 104
EDO
K
201 41,2-ETHANEDIOL