Analysis of Ligand-Protein Contacts in PDB entry:
5NDB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 5NDB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ZN
A
401 1ZINC ION
lig 2
ZN
A
402 1ZINC ION
lig 3
GOL
A
403 6GLYCEROL
lig 4
GOL
A
404 6GLYCEROL
lig 5
GOL
A
405 6GLYCEROL
lig 6
GOL
A
406 6GLYCEROL
lig 7
ZN
A
407 1ZINC ION
lig 8
DMS
A
408 4DIMETHYL SULFOXIDE
lig 9
CL
A
409 1CHLORIDE ION
lig 10
CL
A
410 1CHLORIDE ION
lig 11
CL
A
411 1CHLORIDE ION
lig 12
8TW
A
412 14 CARBOXYLIC ACID
lig 13
ZN
B
401 1ZINC ION
lig 14
ZN
B
402 1ZINC ION
lig 15
GOL
B
403 6GLYCEROL
lig 16
GOL
B
404 6GLYCEROL
lig 17
GOL
B
405 6GLYCEROL
lig 18
ZN
B
406 1ZINC ION
lig 19
CL
B
407 1CHLORIDE ION
lig 20
CL
B
408 1CHLORIDE ION
lig 21
8TW
B
409 14 CARBOXYLIC ACID
lig 22
SO4
B
410 5SULFATE ION
lig 23
TRS
B
411 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL