Analysis of Ligand-Protein Contacts in PDB entry:
5NDF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 5NDF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MN
A
601 1MANGANESE (II) ION
lig 2
UDP
A
602 25URIDINE-5'-DIPHOSPHATE
lig 3
EDO
A
603 41,2-ETHANEDIOL
lig 4
EDO
A
604 41,2-ETHANEDIOL
lig 5
EDO
A
605 41,2-ETHANEDIOL
lig 6
EDO
A
606 41,2-ETHANEDIOL
lig 7
EDO
A
607 41,2-ETHANEDIOL
lig 8
LU2
A
608 212-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-C
lig 9
MN
B
601 1MANGANESE (II) ION
lig 10
UDP
B
602 25URIDINE-5'-DIPHOSPHATE
lig 11
EDO
B
603 41,2-ETHANEDIOL
lig 12
LU2
B
604 212-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-C
lig 13
MN
C
601 1MANGANESE (II) ION
lig 14
UDP
C
602 25URIDINE-5'-DIPHOSPHATE
lig 15
EDO
C
603 41,2-ETHANEDIOL
lig 16
MN
D
601 1MANGANESE (II) ION
lig 17
UDP
D
602 25URIDINE-5'-DIPHOSPHATE
lig 18
EDO
D
603 41,2-ETHANEDIOL
lig 19
LU2
D
604 212-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-C
lig 20
MN
E
601 1MANGANESE (II) ION
lig 21
UDP
E
602 25URIDINE-5'-DIPHOSPHATE
lig 22
EDO
E
603 41,2-ETHANEDIOL
lig 23
MN
F
601 1MANGANESE (II) ION
lig 24
UDP
F
602 25URIDINE-5'-DIPHOSPHATE
lig 25
EDO
F
603 41,2-ETHANEDIOL