Analysis of Ligand-Protein Contacts in PDB entry:
5NDH


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 15 ligands in PDB entry 5NDH. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CBV
A
2 225-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 2
CBV
B
2 225-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 3
CBV
C
2 225-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 4
CBV
D
2 225-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
lig 5
GAI
A
101 4GUANIDINE
lig 6
NA
A
102 1SODIUM ION
lig 7
MG
A
103 1MAGNESIUM ION
lig 8
GAI
B
101 4GUANIDINE
lig 9
NA
B
102 1SODIUM ION
lig 10
NA
B
103 1SODIUM ION
lig 11
GAI
C
101 4GUANIDINE
lig 12
NA
C
102 1SODIUM ION
lig 13
GAI
D
101 4GUANIDINE
lig 14
SO4
D
102 5SULFATE ION
lig 15
SO4
D
103 5SULFATE ION