Analysis of Ligand-Protein Contacts in PDB entry:
5NER


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 26 ligands in PDB entry 5NER. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MAN
C
1 11ALPHA-D-MANNOPYRANOSE
lig 2
MAN
C
2 11ALPHA-D-MANNOPYRANOSE
lig 3
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
MAN
D
3 12ALPHA-D-MANNOPYRANOSE
lig 6
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
MAN
E
2 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
MAN
F
3 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
MAN
G
3 12ALPHA-D-MANNOPYRANOSE
lig 15
MAN
G
4 12ALPHA-D-MANNOPYRANOSE
lig 16
MAN
1
301 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
1
302 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
3
301 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
A
611 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
CA
A
616 1CALCIUM ION
lig 22
CA
A
617 1CALCIUM ION
lig 23
CA
A
618 1CALCIUM ION
lig 24
CA
A
619 1CALCIUM ION
lig 25
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE