Analysis of Ligand-Protein Contacts in PDB entry:
5NN8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 43 ligands in PDB entry 5NN8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CSO
A
938 7S-HYDROXYCYSTEINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
FUC
B
3 10ALPHA-L-FUCOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 13
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
FUC
F
3 10ALPHA-L-FUCOPYRANOSE
lig 16
GLC
G
1 12ALPHA-D-GLUCOPYRANOSE
lig 17
GLC
G
2 11ALPHA-D-GLUCOPYRANOSE
lig 18
AC1
G
3 21 GLUCOPYRANOSE
lig 19
GLC
H
1 1ALPHA-D-GLUCOPYRANOSE
lig 20
AC1
H
2 21 GLUCOPYRANOSE
lig 21
SO4
A
1017 5SULFATE ION
lig 22
SO4
A
1018 5SULFATE ION
lig 23
SO4
A
1019 5SULFATE ION
lig 24
CL
A
1020 1CHLORIDE ION
lig 25
CL
A
1021 1CHLORIDE ION
lig 26
CL
A
1022 1CHLORIDE ION
lig 27
EDO
A
1023 41,2-ETHANEDIOL
lig 28
EDO
A
1024 41,2-ETHANEDIOL
lig 29
EDO
A
1025 41,2-ETHANEDIOL
lig 30
EDO
A
1026 41,2-ETHANEDIOL
lig 31
EDO
A
1027 41,2-ETHANEDIOL
lig 32
EDO
A
1028 41,2-ETHANEDIOL
lig 33
EDO
A
1029 41,2-ETHANEDIOL
lig 34
EDO
A
1030 41,2-ETHANEDIOL
lig 35
EDO
A
1031 41,2-ETHANEDIOL
lig 36
EDO
A
1032 41,2-ETHANEDIOL
lig 37
EDO
A
1033 41,2-ETHANEDIOL
lig 38
EDO
A
1034 41,2-ETHANEDIOL
lig 39
EDO
A
1035 41,2-ETHANEDIOL
lig 40
EDO
A
1036 41,2-ETHANEDIOL
lig 41
EDO
A
1037 41,2-ETHANEDIOL
lig 42
GOL
A
1038 6GLYCEROL
lig 43
PGE
A
1039 7TRIETHYLENE GLYCOL