Analysis of Ligand-Protein Contacts in PDB entry:
5NQ9


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 5NQ9. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 4
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 11
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 16
CU
A
601 1COPPER (II) ION
lig 17
CU
A
602 1COPPER (II) ION
lig 18
CU
A
603 1COPPER (II) ION
lig 19
CU
A
604 1COPPER (II) ION
lig 20
PER
A
605 2PEROXIDE ION
lig 21
PEG
A
616 7DI(HYDROXYETHYL)ETHER
lig 22
PEG
A
617 7DI(HYDROXYETHYL)ETHER
lig 23
PEG
A
618 7DI(HYDROXYETHYL)ETHER
lig 24
PEG
A
619 7DI(HYDROXYETHYL)ETHER
lig 25
FMT
A
620 3FORMIC ACID
lig 26
FMT
A
621 3FORMIC ACID
lig 27
FMT
A
622 3FORMIC ACID
lig 28
FMT
A
623 3FORMIC ACID
lig 29
FMT
A
624 3FORMIC ACID
lig 30
FMT
A
625 3FORMIC ACID
lig 31
FMT
A
626 3FORMIC ACID
lig 32
CU
A
627 1COPPER (II) ION
lig 33
CU
A
628 1COPPER (II) ION
lig 34
PER
C
601 2PEROXIDE ION
lig 35
CU
C
602 1COPPER (II) ION
lig 36
CU
C
603 1COPPER (II) ION
lig 37
CU
C
604 1COPPER (II) ION
lig 38
CU
C
605 1COPPER (II) ION
lig 39
NAG
C
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
PEG
C
612 7DI(HYDROXYETHYL)ETHER
lig 41
PEG
C
613 7DI(HYDROXYETHYL)ETHER
lig 42
PEG
C
614 7DI(HYDROXYETHYL)ETHER
lig 43
FMT
C
615 3FORMIC ACID
lig 44
FMT
C
616 3FORMIC ACID
lig 45
FMT
C
617 3FORMIC ACID
lig 46
FMT
C
618 3FORMIC ACID
lig 47
CU
C
619 1COPPER (II) ION
lig 48
CU
C
620 1COPPER (II) ION