Analysis of Ligand-Protein Contacts in PDB entry:
5NQD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 5NQD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MGD
A
2001 47 DINUCLEOTIDE
lig 2
MGD
A
2002 47 DINUCLEOTIDE
lig 3
O
A
2003 1OXYGEN ATOM
lig 4
4MO
A
2004 1MOLYBDENUM(IV) ION
lig 5
F3S
A
2005 7FE3-S4 CLUSTER
lig 6
SO4
A
2006 5SULFATE ION
lig 7
SO4
A
2007 5SULFATE ION
lig 8
SO4
A
2008 5SULFATE ION
lig 9
SO4
A
2009 5SULFATE ION
lig 10
PGE
A
2010 10TRIETHYLENE GLYCOL
lig 11
GOL
A
2011 6GLYCEROL
lig 12
FES
B
201 4FE2/S2 (INORGANIC) CLUSTER
lig 13
EDO
B
202 41,2-ETHANEDIOL
lig 14
MGD
C
2001 47 DINUCLEOTIDE
lig 15
MGD
C
2002 47 DINUCLEOTIDE
lig 16
O
C
2003 1OXYGEN ATOM
lig 17
4MO
C
2004 1MOLYBDENUM(IV) ION
lig 18
F3S
C
2005 7FE3-S4 CLUSTER
lig 19
SO4
C
2006 5SULFATE ION
lig 20
SO4
C
2007 5SULFATE ION
lig 21
SO4
C
2008 5SULFATE ION
lig 22
SO4
C
2009 5SULFATE ION
lig 23
PEG
C
2010 7DI(HYDROXYETHYL)ETHER
lig 24
GOL
C
2011 6GLYCEROL
lig 25
EDO
C
2012 41,2-ETHANEDIOL
lig 26
FES
D
201 4FE2/S2 (INORGANIC) CLUSTER
lig 27
MGD
E
2001 47 DINUCLEOTIDE
lig 28
MGD
E
2002 47 DINUCLEOTIDE
lig 29
O
E
2003 1OXYGEN ATOM
lig 30
4MO
E
2004 1MOLYBDENUM(IV) ION
lig 31
F3S
E
2005 7FE3-S4 CLUSTER
lig 32
SO4
E
2006 5SULFATE ION
lig 33
SO4
E
2007 5SULFATE ION
lig 34
GOL
E
2008 6GLYCEROL
lig 35
FES
F
201 4FE2/S2 (INORGANIC) CLUSTER
lig 36
MGD
G
2001 47 DINUCLEOTIDE
lig 37
MGD
G
2002 47 DINUCLEOTIDE
lig 38
O
G
2003 1OXYGEN ATOM
lig 39
4MO
G
2004 1MOLYBDENUM(IV) ION
lig 40
F3S
G
2005 7FE3-S4 CLUSTER
lig 41
SO4
G
2006 5SULFATE ION
lig 42
SO4
G
2007 5SULFATE ION
lig 43
P33
G
2008 223,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
lig 44
P33
G
2009 223,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
lig 45
GOL
G
2010 6GLYCEROL
lig 46
GOL
G
2011 6GLYCEROL
lig 47
EDO
G
2012 41,2-ETHANEDIOL
lig 48
FES
H
201 4FE2/S2 (INORGANIC) CLUSTER