Analysis of Ligand-Protein Contacts in PDB entry:
5NTD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 62 ligands in PDB entry 5NTD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
EPE
A
601 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 2
SO4
A
602 5SULFATE ION
lig 3
MN
A
603 1MANGANESE (II) ION
lig 4
MN
A
604 1MANGANESE (II) ION
lig 5
BES
A
605 22 PENTANOIC ACID
lig 6
BCT
A
606 4BICARBONATE ION
lig 7
SO4
B
601 5SULFATE ION
lig 8
MN
B
602 1MANGANESE (II) ION
lig 9
MN
B
603 1MANGANESE (II) ION
lig 10
BES
B
604 22 PENTANOIC ACID
lig 11
BCT
B
605 4BICARBONATE ION
lig 12
SO4
D
601 5SULFATE ION
lig 13
MN
D
602 1MANGANESE (II) ION
lig 14
MN
D
603 1MANGANESE (II) ION
lig 15
BES
D
604 22 PENTANOIC ACID
lig 16
BCT
D
605 4BICARBONATE ION
lig 17
SO4
C
601 5SULFATE ION
lig 18
MN
C
602 1MANGANESE (II) ION
lig 19
MN
C
603 1MANGANESE (II) ION
lig 20
BES
C
604 22 PENTANOIC ACID
lig 21
BCT
C
605 4BICARBONATE ION
lig 22
EPE
E
601 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 23
MN
E
602 1MANGANESE (II) ION
lig 24
MN
E
603 1MANGANESE (II) ION
lig 25
BES
E
604 22 PENTANOIC ACID
lig 26
BCT
E
605 4BICARBONATE ION
lig 27
SO4
F
601 5SULFATE ION
lig 28
MN
F
602 1MANGANESE (II) ION
lig 29
MN
F
603 1MANGANESE (II) ION
lig 30
BES
F
604 22 PENTANOIC ACID
lig 31
BCT
F
605 4BICARBONATE ION
lig 32
SO4
G
601 5SULFATE ION
lig 33
MN
G
602 1MANGANESE (II) ION
lig 34
MN
G
603 1MANGANESE (II) ION
lig 35
BES
G
604 22 PENTANOIC ACID
lig 36
BCT
G
605 4BICARBONATE ION
lig 37
SO4
H
601 5SULFATE ION
lig 38
MN
H
602 1MANGANESE (II) ION
lig 39
MN
H
603 1MANGANESE (II) ION
lig 40
BES
H
604 22 PENTANOIC ACID
lig 41
BCT
H
605 4BICARBONATE ION
lig 42
SO4
I
601 5SULFATE ION
lig 43
MN
I
602 1MANGANESE (II) ION
lig 44
MN
I
603 1MANGANESE (II) ION
lig 45
BES
I
604 22 PENTANOIC ACID
lig 46
BCT
I
605 4BICARBONATE ION
lig 47
SO4
J
601 5SULFATE ION
lig 48
MN
J
602 1MANGANESE (II) ION
lig 49
MN
J
603 1MANGANESE (II) ION
lig 50
BES
J
604 22 PENTANOIC ACID
lig 51
BCT
J
605 4BICARBONATE ION
lig 52
SO4
K
601 5SULFATE ION
lig 53
MN
K
602 1MANGANESE (II) ION
lig 54
MN
K
603 1MANGANESE (II) ION
lig 55
BES
K
604 22 PENTANOIC ACID
lig 56
BCT
K
605 4BICARBONATE ION
lig 57
EPE
L
601 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 58
SO4
L
602 5SULFATE ION
lig 59
MN
L
603 1MANGANESE (II) ION
lig 60
MN
L
604 1MANGANESE (II) ION
lig 61
BES
L
605 22 PENTANOIC ACID
lig 62
BCT
L
606 4BICARBONATE ION