Analysis of Ligand-Protein Contacts in PDB entry:
5OPD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 40 ligands in PDB entry 5OPD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
383 11PHOSPHOTHREONINE
lig 2
TPO
B
383 11PHOSPHOTHREONINE
lig 3
IOD
A
501 1IODIDE ION
lig 4
IOD
A
502 1IODIDE ION
lig 5
IOD
A
503 1IODIDE ION
lig 6
IOD
A
504 1IODIDE ION
lig 7
IOD
A
505 1IODIDE ION
lig 8
IOD
A
506 1IODIDE ION
lig 9
IOD
A
507 1IODIDE ION
lig 10
IOD
A
508 1IODIDE ION
lig 11
IOD
A
509 1IODIDE ION
lig 12
IOD
A
510 1IODIDE ION
lig 13
IOD
A
511 1IODIDE ION
lig 14
IOD
A
512 1IODIDE ION
lig 15
IOD
A
513 1IODIDE ION
lig 16
IOD
A
514 1IODIDE ION
lig 17
MG
A
515 1MAGNESIUM ION
lig 18
GTP
A
516 32GUANOSINE-5'-TRIPHOSPHATE
lig 19
NA
A
517 1SODIUM ION
lig 20
NA
A
518 1SODIUM ION
lig 21
GOL
A
519 6GLYCEROL
lig 22
IOD
B
501 1IODIDE ION
lig 23
IOD
B
502 1IODIDE ION
lig 24
IOD
B
503 1IODIDE ION
lig 25
IOD
B
504 1IODIDE ION
lig 26
IOD
B
505 1IODIDE ION
lig 27
IOD
B
506 1IODIDE ION
lig 28
IOD
B
507 1IODIDE ION
lig 29
IOD
B
508 1IODIDE ION
lig 30
IOD
B
509 1IODIDE ION
lig 31
IOD
B
510 1IODIDE ION
lig 32
IOD
B
511 1IODIDE ION
lig 33
IOD
B
512 1IODIDE ION
lig 34
IOD
B
513 1IODIDE ION
lig 35
IOD
B
514 1IODIDE ION
lig 36
MG
B
515 1MAGNESIUM ION
lig 37
GTP
B
516 32GUANOSINE-5'-TRIPHOSPHATE
lig 38
NA
B
517 1SODIUM ION
lig 39
NA
B
518 1SODIUM ION
lig 40
NA
B
519 1SODIUM ION