Analysis of Ligand-Protein Contacts in PDB entry:
5TCD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 52 ligands in PDB entry 5TCD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 11
ZN
A
501 1ZINC ION
lig 12
ZN
A
502 1ZINC ION
lig 13
NAG
A
513 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NA
A
514 1SODIUM ION
lig 15
IOD
A
515 1IODIDE ION
lig 16
IOD
A
516 1IODIDE ION
lig 17
IOD
A
517 1IODIDE ION
lig 18
IOD
A
518 1IODIDE ION
lig 19
IOD
A
519 1IODIDE ION
lig 20
IOD
A
520 1IODIDE ION
lig 21
IOD
A
521 1IODIDE ION
lig 22
IOD
A
522 1IODIDE ION
lig 23
IOD
A
523 1IODIDE ION
lig 24
IOD
A
524 1IODIDE ION
lig 25
IOD
A
525 1IODIDE ION
lig 26
IOD
A
526 1IODIDE ION
lig 27
IOD
A
527 1IODIDE ION
lig 28
IOD
A
528 1IODIDE ION
lig 29
IOD
A
529 1IODIDE ION
lig 30
IOD
A
530 1IODIDE ION
lig 31
IOD
A
531 1IODIDE ION
lig 32
IOD
A
532 1IODIDE ION
lig 33
IOD
A
533 1IODIDE ION
lig 34
IOD
A
534 1IODIDE ION
lig 35
IOD
A
535 1IODIDE ION
lig 36
IOD
A
536 1IODIDE ION
lig 37
IOD
A
537 1IODIDE ION
lig 38
IOD
A
538 1IODIDE ION
lig 39
IOD
A
539 1IODIDE ION
lig 40
IOD
A
540 1IODIDE ION
lig 41
IOD
A
541 1IODIDE ION
lig 42
IOD
A
542 1IODIDE ION
lig 43
IOD
A
543 1IODIDE ION
lig 44
IOD
A
544 1IODIDE ION
lig 45
IOD
A
545 1IODIDE ION
lig 46
IOD
A
546 1IODIDE ION
lig 47
IOD
A
547 1IODIDE ION
lig 48
IOD
A
548 1IODIDE ION
lig 49
IOD
A
549 1IODIDE ION
lig 50
IOD
A
550 1IODIDE ION
lig 51
IOD
A
551 1IODIDE ION
lig 52
PC
A
552 11PHOSPHOCHOLINE