Analysis of Ligand-Protein Contacts in PDB entry:
5THR


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 5THR. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
V
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
V
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
W
3 11BETA-D-MANNOPYRANOSE
lig 8
MAN
W
4 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
W
5 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
X
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
X
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
X
5 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
Y
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
Y
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
BMA
Y
3 11BETA-D-MANNOPYRANOSE
lig 18
MAN
Y
4 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
Z
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
Z
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
Z
3 11BETA-D-MANNOPYRANOSE
lig 22
MAN
Z
4 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
Z
5 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
a
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
a
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
BMA
a
3 11BETA-D-MANNOPYRANOSE
lig 27
MAN
a
4 11ALPHA-D-MANNOPYRANOSE
lig 28
MAN
a
5 11ALPHA-D-MANNOPYRANOSE
lig 29
NAG
b
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
b
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
BMA
b
3 11BETA-D-MANNOPYRANOSE
lig 32
MAN
b
4 11ALPHA-D-MANNOPYRANOSE
lig 33
NAG
c
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
c
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
BMA
c
3 11BETA-D-MANNOPYRANOSE
lig 36
MAN
c
4 11ALPHA-D-MANNOPYRANOSE
lig 37
MAN
c
5 11ALPHA-D-MANNOPYRANOSE
lig 38
NAG
d
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
BMA
d
3 11BETA-D-MANNOPYRANOSE
lig 41
MAN
d
4 11ALPHA-D-MANNOPYRANOSE
lig 42
MAN
d
5 11ALPHA-D-MANNOPYRANOSE