Analysis of Ligand-Protein Contacts in PDB entry:
5V4E


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 5V4E. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
I
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
MAN
I
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
I
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
FUC
I
8 10ALPHA-L-FUCOPYRANOSE
lig 9
BMA
J
1 11BETA-D-MANNOPYRANOSE
lig 10
MAN
J
2 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
J
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
K
1 11BETA-D-MANNOPYRANOSE
lig 13
MAN
K
2 11ALPHA-D-MANNOPYRANOSE
lig 14
NAG
K
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 18
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
L
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
MAN
L
6 11ALPHA-D-MANNOPYRANOSE
lig 21
FUC
L
7 10ALPHA-L-FUCOPYRANOSE
lig 22
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 25
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 26
NAG
M
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
MAN
M
6 11ALPHA-D-MANNOPYRANOSE
lig 28
NAG
M
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
FUC
M
8 10ALPHA-L-FUCOPYRANOSE
lig 30
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 33
MAN
N
4 11ALPHA-D-MANNOPYRANOSE
lig 34
NAG
N
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 36
NAG
N
7 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
FUC
N
8 10ALPHA-L-FUCOPYRANOSE
lig 38
K
A
509 1POTASSIUM ION
lig 39
MAN
B
501 11ALPHA-D-MANNOPYRANOSE
lig 40
MAN
B
502 11ALPHA-D-MANNOPYRANOSE
lig 41
NAG
B
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
K
D
504 1POTASSIUM ION