Analysis of Ligand-Protein Contacts in PDB entry:
5VBI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 22 ligands in PDB entry 5VBI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
117 10PHOSPHOSERINE
lig 2
SEP
B
117 10PHOSPHOSERINE
lig 3
SO4
A
601 5SULFATE ION
lig 4
SO4
A
602 5SULFATE ION
lig 5
SO4
A
603 5SULFATE ION
lig 6
MG
A
604 1MAGNESIUM ION
lig 7
GOL
A
605 6GLYCEROL
lig 8
GOL
A
606 6GLYCEROL
lig 9
GOL
A
607 6GLYCEROL
lig 10
GOL
A
608 6GLYCEROL
lig 11
GOL
A
609 6GLYCEROL
lig 12
GOL
A
610 6GLYCEROL
lig 13
SO4
B
601 5SULFATE ION
lig 14
SO4
B
602 5SULFATE ION
lig 15
MG
B
603 1MAGNESIUM ION
lig 16
GOL
B
604 6GLYCEROL
lig 17
GOL
B
605 6GLYCEROL
lig 18
GOL
B
606 6GLYCEROL
lig 19
GOL
B
607 6GLYCEROL
lig 20
GOL
B
608 6GLYCEROL
lig 21
GOL
B
609 6GLYCEROL
lig 22
GOL
B
610 6GLYCEROL