Analysis of Ligand-Protein Contacts in PDB entry:
5VEO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 5VEO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 9
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 10
FUC
C
5 10ALPHA-L-FUCOPYRANOSE
lig 11
ZN
A
501 1ZINC ION
lig 12
ZN
A
502 1ZINC ION
lig 13
ZN
A
503 1ZINC ION
lig 14
NAG
A
509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
A
510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
A
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
A
517 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
EDO
A
518 41,2-ETHANEDIOL
lig 19
EDO
A
519 41,2-ETHANEDIOL
lig 20
PGE
A
520 10TRIETHYLENE GLYCOL
lig 21
PEG
A
521 7DI(HYDROXYETHYL)ETHER
lig 22
PEG
A
522 7DI(HYDROXYETHYL)ETHER
lig 23
PEG
A
523 7DI(HYDROXYETHYL)ETHER
lig 24
AMP
A
524 23ADENOSINE MONOPHOSPHATE
lig 25
AMP
A
525 23ADENOSINE MONOPHOSPHATE