Analysis of Ligand-Protein Contacts in PDB entry:
5VGJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5VGJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
A
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
A
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
A
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
A
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
A
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
A
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
A
7 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
B
6 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
B
7 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 18
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
C
5 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
G
1330 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE