Analysis of Ligand-Protein Contacts in PDB entry:
5VMA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5VMA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
G2I
A
801 32 O-BETA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRAN
lig 2
G2I
A
802 32 O-BETA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRAN
lig 3
9MR
A
803 21 BETA-D-GLUCOPYRANOSIDE
lig 4
CA
A
804 1CALCIUM ION
lig 5
CA
A
805 1CALCIUM ION
lig 6
NA
A
806 1SODIUM ION
lig 7
EDO
A
807 41,2-ETHANEDIOL
lig 8
EDO
A
808 41,2-ETHANEDIOL
lig 9
EDO
A
809 41,2-ETHANEDIOL
lig 10
EDO
A
810 41,2-ETHANEDIOL
lig 11
EDO
A
811 41,2-ETHANEDIOL
lig 12
EDO
A
812 41,2-ETHANEDIOL
lig 13
EDO
A
813 41,2-ETHANEDIOL
lig 14
EDO
A
814 41,2-ETHANEDIOL
lig 15
EDO
A
815 41,2-ETHANEDIOL
lig 16
EDO
A
816 41,2-ETHANEDIOL
lig 17
EDO
A
817 41,2-ETHANEDIOL
lig 18
EDO
A
818 41,2-ETHANEDIOL
lig 19
MLI
A
819 7MALONATE ION
lig 20
ACT
A
820 4ACETATE ION