Analysis of Ligand-Protein Contacts in PDB entry:
5VMC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 5VMC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
H
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
GAL
H
2 11BETA-D-GALACTOPYRANOSE
lig 6
SIA
H
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 7
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
J
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
J
2 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
J
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
K
2 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
L
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
GAL
L
2 11BETA-D-GALACTOPYRANOSE
lig 16
SIA
L
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 17
NAG
A
1004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
C
1003 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE