Analysis of Ligand-Protein Contacts in PDB entry:
5VMF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 17 ligands in PDB entry 5VMF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
H
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
GAL
H
2 11BETA-D-GALACTOPYRANOSE
lig 6
SIA
H
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 7
NAG
I
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
GAL
I
2 11BETA-D-GALACTOPYRANOSE
lig 9
SIA
I
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 10
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
J
2 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
K
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
GAL
K
2 11BETA-D-GALACTOPYRANOSE
lig 14
SIA
K
3 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 15
NAG
A
1004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
C
1001 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
C
1002 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE